Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq71 170 2e-37 seq10 140 3e-28 seq558 95.1 1e-14 >seq71 Length=1348405 Score = 170 bits (188), Expect = 2e-37 Identities = 674/1049 (64%), Gaps = 36/1049 (3%) Strand=Plus/Plus Query 156176 GTGCGAAAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATGTGCACCGAC 156235 ||||| || || |||||||| |||||||| || |||||||| || | ||| | || Sbjct 494679 GTGCGTAAGTAATACATGCCCGTTTTGAGTCCTGCTTTCCAACCATAAAAGTGTATAGAG 494738 Query 156236 GCCATTTTAGGCAAAGTAGGGTTTG-CCATGTACACGTTGAACGATTGACTTTGATCGAT 156294 | | || | || ||| ||| | | ||| || | ||||||||||| ||||||||||| Sbjct 494739 GTGAGCTT-GCCATAGTTGGGCTCGGCCACGTGTATATTGAACGATTGGCTTTGATCGAT 494797 Query 156295 AAATGCTCCCCTGTCTGCTGCCATTTCAATCATATATTTTCCATTGTTCTCCCAAATTTC 156354 ||||| || | ||||| ||||||| || | ||||| | || |||| || Sbjct 494798 GAATGCGCCACGATCTGCAGCCATTTTGATGG-AGGTTTTC-ACTG-------AAATCTC 494848 Query 156355 CCAGATTGTCATGTACAGCTTTTTTAGATTGTCGGGAATTTTGGCGATAGAAGCTATCGA 156414 ||| | ||| ||||||| | || || | || || | | || ||| || Sbjct 494849 CCAAACAGTCTTGTACAGATCGCGTATATGTTTCGGTATGGTTTCAATGTTTTGTATAGA 494908 Query 156415 TCCTCTGTTTGCCATGATTGTTTTTCGCATACTATTTGTATAGAGATTTAATTTGATTAG 156474 || | | || || || || ||| |||| || | | | || | | | || Sbjct 494909 ACCACGATGTGTTATAATGGTATTTTTCATATCATCATCCCACAAACCCAACTCGGTGAG 494968 Query 156475 ATCATCGACCAAGTAGCGGTTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAA 156534 ||| | ||||| | ||||||||||| ||||| ||||| | ||||| | | | Sbjct 494969 ATCGCGTAACAAGTGATGATTGACAACTTGGAATTCACCCGAAAGCACACGACGTGTATA 495028 Query 156535 CAAATT---ACTGTGAAACGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGT 156591 | ||| | ||| |||||||||| ||||| || ||| | ||||||||||| | Sbjct 495029 AATATTCGAAGTGT---ACGGTTCAAACGACTCATTATTGCCCATAATTTGTGCGGTAGA 495085 Query 156592 GGCCGTCGGCATGTACGCCACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTAT 156651 || || ||||| || | | |||||| || |||| || | || | ||| || Sbjct 495086 AGCAGTTGGCATCGGTGCAAGCAACAATGAGTTGCGTACACCATGTTGCTTTATTTTCTC 495145 Query 156652 TTTCAACTGTGACCAGTCCCATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAA 156711 ||||| | | ||||| ||| | ||| || ||| ||||| || ||||| | Sbjct 495146 CTTCAATTCGGTCCAGTTCCAGAGATCAGTTGGCGTTTTATCCCACATGTCATATTGTAG 495205 Query 156712 TATTCCTTCGCTCGCTTTGCTACCGGCAAACGTGCTATAAGGCTCAC---TAACAGATGC 156768 ||| || | ||| || ||| || | || |||| || | ||| | Sbjct 495206 TATACCCTTGCTGACTGGTGAACCTTCATATGTCTCGTAAGTGCCATATTTTTCAG---C 495262 Query 156769 CAGTTCGTAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAA 156828 || ||| ||||||| || | || ||| || | |||||| ||||||| |||||| Sbjct 495263 CAATTCACAACTGGCTTCCAATGCGCCATAGTAAATAGTTTCGAATATTTGTTGATTCAA 495322 Query 156829 TAGAACGGCAGCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACC 156888 | || |||| || |||| || | |||| | || || || ||||| ||||| Sbjct 495323 CAAGTATGCCTCATCACTTTCGTATGGAAAACGCATTAAAATTAAGGCGTCGGCAAAACC 495382 Query 156889 TTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGG 156948 ||| |||||||| || ||||||||||| |||| ||| ||||| || || | | || | Sbjct 495383 TTGTATGCCAATACCAATGGGACGATGTCGCAAATTCGATTTCTTGGCC--TCCGGTAAG 495440 Query 156949 GTAGAA--ATTGCGATCAATAATTTTATTCAAACTATCCACTACATGTTT---GACCACA 157003 | | || |||| || || ||||| |||||| || | ||| ||| ||| | Sbjct 495441 GGATAATGATTGACGTCTATGATTTTGTTCAAATTACGCGTAACAATTTTTGTGACTTCT 495500 Query 157004 GTGTGCAATAGTTGAAAATCAAAAGTATCATTAT---TGATATATTTATTGACGGCAATC 157060 | || ||| ||| ||| | || | || ||| ||| | || | || || Sbjct 495501 TTAAGCC---GTTTAAAGTCATACGTTTTATCTGGTGTGACATACATGTTCAATGCTATT 495557 Query 157061 GACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACAC 157120 || |||| ||| || || || |||||||| ||| |||||| || ||||| | |||| Sbjct 495558 GAGGCTAAATTGCAAACAGCTACCTCGTCGGGTGCGGAATATTCAACAATTTCGGTACAC 495617 Query 157121 AAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCC 157180 ||||| || ||||| ||| || ||| ||||| || || | |||||||| || Sbjct 495618 AAATTACTACATTTAATCGTGCCAATATTCTGCTGATTACTCTTTCTATTGCAAGCATCT 495677 Query 157181 TTGTATAACATGTACGGTGTGCCGGTTTC 157209 || || |||||||||||||||||||| || Sbjct 495678 TTATACAACATGTACGGTGTGCCGGTCTC 495706 >seq10 Length=3877145 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | ||| ||||||| |||||| || || || |||||||||||| | Sbjct 2844588 CCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGAC 2844529 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| ||||||||||| ||| |||| | |||||| ||||| || || Sbjct 2844528 AAGGTACGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGG 2844469 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| || ||| | | ||| | || || | ||||| || Sbjct 2844468 ATTCCTTCTTTGTCCTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACC 2844409 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||||| ||||| || || ||||| |||||||| Sbjct 2844408 TCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 2844362 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || || |||| ||| || || ||||| |||||||| ||| | Sbjct 2845044 CCACCACGGAGACGCAATACCAAGTGAAGTGTTGACTCCTTTTGGATGTTGTAGTCGGAC 2844985 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| ||| || | ||| || ||||| | || | |||||| ||||| || || Sbjct 2844984 AATGTGCGTCCGTCCTCCAATTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGGGGA 2844925 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| ||||||| ||| | | ||| | || || | ||||| || Sbjct 2844924 ATACCCTCTTTGTCTTGAATTTTTGCTTTAACGTTTTCGATTGTATCAGAAGGTTCAACC 2844865 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || || || ||||||||||| ||||| ||||||||| Sbjct 2844864 TCCAGAGTAATTGTTTTTCCCGTCAATGTTTTAACGAAGATTTGCATA 2844817 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | |||||| || ||||||| || ||||| ||||| |||||||||||| Sbjct 2845501 GCCACCACGGAGACGCAATACCAAATGAAGGGTTGATTCCTTTTGGATGTTGTAATCGGA 2845442 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | ||| || | ||||||||| ||| |||||| |||||| ||||| || || Sbjct 2845441 CAAAGTACGTCCGTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGG 2845382 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || || || || || || | | ||| | ||||| | ||||| || Sbjct 2845381 GATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTTTCGATGGTGTCGGATGGTTCGAC 2845322 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || || || || | || || ||||| ||||||||| Sbjct 2845321 CTCCAAAGTAATAGTTTTACCAGTAAGGGTCTTCACGAAGATTTGCATA 2845273 >seq558 Length=79715 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||| | ||||| || | |||||| || || || |||||||| || | Sbjct 66408 CCACCTCTAAGACGAAGGACTAAGTGTAATGTAGACTCCTTCTGAATGTTGTAGTCTGCC 66349 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| || || | |||||| || ||| | || | ||| || ||||| || || Sbjct 66348 AATGTGCGACCATCCTCCAATTGTTTTCCGGCAAAAATTAAACGCTGTTGATCTGGTGGA 66289 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||||| ||| | ||||| | || |||| ||||| || Sbjct 66288 ATCCCTTCCTTATCTTGGATTTTGGCTTTAACATGTTCGATAGTATCCGAAGGTTCAACC 66229 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGC 143187 |||| ||| | || || || || | ||||||||||| |||||||| || Sbjct 66228 TCAAGAGTGATGGTTTTACCCGTAAGGGTTTTTACGAAAATTTGCATTGC 66179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506979086447040