Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq22 138 2e-27 seq45 132 7e-26 seq7 118 2e-21 seq71 116 5e-21 >seq22 Length=2856468 Score = 138 bits (152), Expect = 2e-27 Identities = 283/417 (68%), Gaps = 14/417 (3%) Strand=Plus/Minus Query 127312 CCGGCTATGATTAGCCTAGGTTTGAATAGATTGGCACTCTCGGCAAGTTTGGCATAGTCG 127371 ||||||||||||| | ||| |||| || |||||| || | | | || | || ||| Sbjct 1119097 CCGGCTATGATTACACGCGGTCTGAAGAGTTTGGCATTCGCTTCCAATTGATCGTAATCG 1119038 Query 127372 ACGAGTCCAGTCTGAGGATCCACCTTGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCG 127431 | || || || || | ||||| || || ||||| ||||||||| | | ||||| || Sbjct 1119037 ATTAGACCCGTTTGTGCGTCCACTTTATAAGGCATACTTTCGAAATAAATCGATGTTGCT 1118978 Query 127432 GACA--CGTT-----GCGG-----AATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCG 127479 || | |||| || | || ||||| || | || || || ||||||| ||| Sbjct 1118977 GAAATACGTTTATTGGCTGTCATGAAACCGTGTGTTAAATGACCACCATCGGGCAAATCA 1118918 Query 127480 AGTCCCATGATTCTACCGTGCGGTTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATC 127539 || ||||| || | | |||| |||| | || ||||||| |||||||| || || | Sbjct 1118917 AGACCCATTATACGATCGTGGGGTTGACAGAGCGCAGTGTAAACGGCAAAATTTGCTGGC 1118858 Query 127540 GAGCCCGAGTACGGTTGTACACACACTCCCCATTCGGACTCGTTCAAATTGAACGCTCTG 127599 || ||||| || || || ||| || ||||| || | |||| | || ||| Sbjct 1118857 GAACCCGAATAAGGCTGCACATTGACACCCCACTCTTCCGGATTCAGACGAAATGCTTCA 1118798 Query 127600 AGACATCGCTGCTGTGCTAGCAGTTCGATGCGATCGATAAACTCGTTACCACCATAGTAT 127659 || || | || || || |||| || ||| ||||| || || ||||||||||| Sbjct 1118797 AGTGCACGTTTTTGAGCAAGGCGTTCTATTTCATCAATAAATTCATTGCCACCATAGTAC 1118738 Query 127660 CGCTTTCCGGGCCTACCCTCCGAGTACTTGTTGATG-AGACACGAACTCATGCATTC 127715 ||||| || ||| | || || || ||||| || ||| ||||| ||||||| |||||| Sbjct 1118737 CGCTTGCCAGGCATGCCTTCGGAATACTTATT-ATGCAGACAAGAACTCAAGCATTC 1118682 >seq45 Length=1794600 Score = 132 bits (146), Expect = 7e-26 Identities = 280/413 (68%), Gaps = 6/413 (1%) Strand=Plus/Plus Query 70062 AAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATG 70121 |||| || ||||| || ||||| ||||| || || ||| | || | || ||||||| Sbjct 1449461 AAGAAGGTGATCTAGGTCCAGTTTACGGTTTTCAATGGCGTCATTTTGGGGCCAAGTACA 1449520 Query 70122 TAGACTGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGAC 70180 | ||| | ||||| || ||| |||| || |||||| | ||| | | ||| || Sbjct 1449521 GGAATTGCAAAGACAGT-TACAAAGGTGAGGGAGTGGATCAACTTCAGGAAGTGATTAAC 1449579 Query 70181 ACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGAT 70240 || ||| | |||||||| ||| | | || |||||| | |||||||||| ||| Sbjct 1449580 ACAATCAGAAACAATCCAAATGATCGACGTATTATAATGTCTGCGTGGAATCCTGTCGAT 1449639 Query 70241 TTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTA--CGATG 70298 | | |||||||| || || || ||||| ||| | || || |||| | || | ||| Sbjct 1449640 ATACCTCAAATGGCTCTGCCCCCTTGTCATTGTCTTGCACAATTTT--TTGTTGCCAATG 1449697 Query 70299 GCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTA 70358 | | ||||| || | | || || | ||||| |||||||| | |||||||| || | Sbjct 1449698 GAGAGTTGTCTTGTCAATTATACCAACGTAGTGCTGACATGGGATTAGGTGTACCATTCA 1449757 Query 70359 ACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGC 70418 | |||||| || | || | || | ||||||||||||||||| | || | | Sbjct 1449758 ATATTGCATCATACGCGTTGCTTACCTATATGATTGCTCACATTACTGATCTCCGACCAG 1449817 Query 70419 ACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAG 70471 || ||||| ||||| | ||||| || ||||| ||| ||||| |||||| Sbjct 1449818 GGGACTTCGTCCACACTTTAGGCGATGCACACGTTTATAACAATCATATCGAG 1449870 >seq7 Length=4380649 Score = 118 bits (130), Expect = 2e-21 Identities = 469/727 (65%), Gaps = 36/727 (5%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| | || || |||||||| || || || || ||||| || || || || | |||| Sbjct 4095270 AGGCAGAAGCGTCGTTTTGGACAGTTGAGGAAGTGGATCTTTCTAAAGATATGGATGATT 4095211 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 ||| | ||| | ||||| | ||| || | || || || ||| | || ||||| |||| Sbjct 4095210 GGG---CACGTCTCACTGACAATGAACGGCATTTCATCTCACACGTATTAGCCTTTTTTG 4095154 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACC 125216 ||| || ||||| || || || || ||| | ||||| ||||||| ||| ||| | || Sbjct 4095153 CCGCATCTGATGGTATTGTTAATGAGAATTTAGTTGA-ACGATTCAGTCAGGAGGT--CC 4095097 Query 125217 A--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGG 125274 | || |||||| || || || ||||| ||||| || ||||||||||| || | Sbjct 4095096 AAGTTACAGAGGCACGTTGTTTCTATGGATTTCAAATTGCTATGGAGAACGTGCATTCCG 4095037 Query 125275 AAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCT 125334 ||||||| || | | || || | || ||| ||| || ||| | || | | Sbjct 4095036 AAATGTATAGTATATTAATCGATACATATATTAAGGATTCGAAACAAAGGAACTATTTAT 4094977 Query 125335 TTAACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTCGG 125390 | || || || || ||| |||| | |||||| ||||| | |||| || Sbjct 4094976 TCAATGCTATTGAAACGATGCCTGC----CGTAAAGCGTAAGGCAGATTGGGCACTTGCT 4094921 Query 125391 TGGA-----TCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCG 125445 |||| || | | || ||| || || || | | | ||||| || || | Sbjct 4094920 TGGATTTCCTCAAAGTCGGCAAACTTTGGT-----GAACGTGTAATTGCATTTGCAGCTG 4094866 Query 125446 TAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGAC 125505 | || || || || || || ||||||||| | ||||| ||||| || || || || Sbjct 4094865 TGGAAGGTATTTTTTTCAGTGGAAGTTTTGCGTCGATCTTCTGGCTTAAAAAACGTGGTT 4094806 Query 125506 TCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTG 125565 | ||||| || | ||| || ||| | || || ||||||||||| || || |||| Sbjct 4094805 TAATGCCTGGCTTAACGTTTTCCAATGAGCTAATCTCACGAGACGAGGGTCTGCATTGTG 4094746 Query 125566 ACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAA 125625 | || || | | ||||| |||| || || | | || || | || ||||| Sbjct 4094745 ATTTCGCATGTTTGATGTTT--CAAC-ATTTG-ATACAGA----AG-CCAAGTAATGAAC 4094695 Query 125626 AGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCC 125685 | || | || | |||| || || | || || ||||| || |||| || | Sbjct 4094694 GAATTATTGAAATCATTTCCGAAGCTGTTAAAATTGAGCAAGAATTCTTAACTGACGCTT 4094635 Query 125686 TACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGG 125745 | || || | | ||||| ||||| ||||| ||||| ||| || ||||| ||||||| Sbjct 4094634 TGCCCGTAAATTTAATTGGTATGAATTGCAAATCAATGTCCGATTATATAGAATTTGTGG 4094575 Query 125746 CAGATCG 125752 | ||||| Sbjct 4094574 CTGATCG 4094568 >seq71 Length=1348405 Score = 116 bits (128), Expect = 5e-21 Identities = 320/483 (66%), Gaps = 12/483 (2%) Strand=Plus/Minus Query 97785 AACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCT 97844 ||||| ||| || | ||||||||||| || ||| | || | ||| | | |||||| | Sbjct 495118 AACTCATTGTTGCTTGCACCGATGCCAACTGCTTCTACCGCACAAATTATGGGCAATAAT 495059 Query 97845 GAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTT 97904 || || |||||||||| ||| || || || || | || | || || || || Sbjct 495058 GAGTCGTTTGAACCGTACACTTCGAATATTTATACACGTCGTGTGCTTTCGGGTGAATTC 494999 Query 97905 CAA-TTGACCAACGTGCACTTGGTTCGAGACTTGGAACG-GCTCAATCTGTGGAACGATG 97962 ||| ||| | | | | |||||| | || || | | || | | | ||||| | |||| Sbjct 494998 CAAGTTGTCAATCAT-CACTTGTTACGCGATCTC-ACCGAGTTGGGTTTGTGGGATGATG 494941 Query 97963 ACATGGCCCAGTTGATCATGTACAACAA----TGGGTCCATTCAAAACATTACCATCATC 98018 | ||| | | ||| || |||| ||| || || ||||||||| | ||| Sbjct 494940 ATATGAAAAAT---ACCAT-TATAACACATCGTGGTTCTATACAAAACATTGAAACCATA 494885 Query 98019 CCGGAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATC 98078 ||| || | | ||| | ||||||||||| ||||||||| | || || ||| Sbjct 494884 CCGAAACATATACGCGATCTGTACAAGACTGTTTGGGAGATTTCAGTGAAAACCTCCATC 494825 Query 98079 GATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTT 98138 | |||||||| || | || | | ||| || || || |||||||||||| | |||| Sbjct 494824 AAAATGGCTGCAGATCGTGGCGCATTCATCGATCAAAGCCAATCGTTCAATATACACGTG 494765 Query 98139 GCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTC 98198 |||||||||| ||| | | || || ||||||||||| | ||||| || ||| Sbjct 494764 GCCGAGCCCAACTATGGCAAGCTCACCTCTATACACTTTTATGGTTGGAAAGCAGGACTC 494705 Query 98199 AAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTG 98258 || ||||||||||| || | | || ||| | || | ||||| |||| ||| || || Sbjct 494704 AAAACGGGCATGTATTACTTACGCACGAAGCCAGCAGCAAATGCTATACAATTCACAGTT 494645 Query 98259 GAC 98261 ||| Sbjct 494644 GAC 494642 Score = 109 bits (120), Expect = 8e-19 Identities = 186/268 (69%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGT--CAC 96864 ||||| |||| ||| ||| ||||||||||||| ||| ||| ||| ||||| ||| Sbjct 496108 ACAAATGGCACTTCCAATGGTTTAGTGCCAATGCTGAGAGTGTTTAAT--AATGTGGCAC 496051 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 | || ||| || || ||| ||| || || ||||| | ||| |||| ||||||| | Sbjct 496050 GTTATGTTGATCAAGGTGGCGGTAAGCGTCCCGGCGCCTTTGCCATCTATCTGGAACCAT 495991 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 |||| ||||||||||| || ||| | || || ||||| ||||| |||||| | Sbjct 495990 GGCATGCGGACGTTTTCGAGTTTTTGGATTTGAAGAAAAATACTGGCAAAGAAGAGCATC 495931 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 | || || || || || ||||| | ||| | || ||| | || ||| || ||| | | Sbjct 495930 GCGCAAGAGATTTATTCTATGCCTTGTGGATACCGGATCTATTTATGCGACGTGTCGAAG 495871 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCC 97072 || || ||||| |||||||| || Sbjct 495870 CCGATGAAGACTGGTCGCTAATGTGTCC 495843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741007585226720