Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_004166.2 Length=44010 Score E Sequences producing significant alignments: (Bits) Value seq884 149 2e-31 >seq884 Length=19560 Score = 149 bits (164), Expect = 2e-31 Identities = 669/1044 (64%), Gaps = 42/1044 (4%) Strand=Plus/Plus Query 511 GAACAATCAGTATTCGAACAGCTCAAAGAGGCAATCGACATGCTGGAAGTAGGCCACCTC 570 ||||||||| | | || || | ||| |||||| || || | ||| || || Sbjct 7540 GAACAATCAATCTATGAGCAAATGAAATGGGCAATTGAACAGCAAGGGGTAACGCATCTA 7599 Query 571 TGGAAAGTGAGTAAGTCGCCGCTCAGGCTGACATACATACCTAGAGGAAACAGCATTATT 630 | ||| | | ||| |||||| | || | |||||||||||| | || || || ||| Sbjct 7600 TTTAAATTTAATAAATCGCCGTTGAGAATCACATACATACCTCGTGGTAATTATATGATT 7659 Query 631 TTCCGTGGTGGCGACGATGTACAAAAGATCAAGTCAATCAAAGCAAGCAAATTCCCTGTA 690 ||| | |||| | | || ||| |||||||| | |||| || ||||| | Sbjct 7660 TTCAGAGGTGCCCAAAATCCTGAAAGAATCAAGTCTTTAAAAGATAGTCGGTTCCCGTTT 7719 Query 691 GC---TGGCATGTGGATTGAGGAGCTTGCCGAATTCAAGACTGAGGAAGAAGTATCCGTA 747 || |||| |||||||||||| | | ||| || || ||||| || |||||| | Sbjct 7720 GCGATTGGC---TGGATTGAGGAGTTAGGCGAGTTTAAAACTGAAGATGAAGTAACGACC 7776 Query 748 ATTGAAAAGTCGGTTCTTCGTGCTGAATTGCCGCCGGGATGCCGCTATATTTTCTTTTAC 807 ||| || || || | |||| |||||| || |||| ||||||| | Sbjct 7777 ATTACCAATTCACTTTTACGTGGTGAATTAGGAAATGGTCTTTTTTATAAATTCTTTTTC 7836 Query 808 TCATACAACCCGCCGAAAAGAAAGCAAAGTTGGGTGAATAAGGTCTTTAATTCGTCATTC 867 ||||||||||| ||| | ||| ||||||||| ||| | | | || ||| Sbjct 7837 AGCTACAACCCGCCAAAACGTCGACAATCTTGGGTGAACAAGAAATATGAATCTAGTTTC 7896 Query 868 CTGCCCGCTAACACGTTCGTAGACCACTCGACATACCTACAGAACCCCTTCCTCTCAAAA 927 | || | ||| || || || | ||||| || || | | || || || | || | | Sbjct 7897 CAACCTGATAATACATTTGTTCATCACTCTACTTATAAAGATAATCCTTTTATTTCGAGA 7956 Query 928 GCGTTTATAGAGGAAGCTGAGGAGGTTAAACGGCGCAATGAATTGAAGTACC-GACATGA 986 | || | | |||| |||| | | | | ||| || || | || || Sbjct 7957 GAATTCTTGAAAGAAGTGGAGGCAGCAAGAGATAGAAATCCTTTTC-GTGCTAGATGGGA 8015 Query 987 GTACCTTGGAGAAGCACTCGGGAGCGGCGTTGTGCCATTTGAGAACCTACAGATCGAGGA 1046 ||| ||| |||||| |||| || || || ||||| ||| || | | ||| | Sbjct 8016 ATACGATGGTGAAGCAATCGGTTCTGGAGTCGTTCCATTCAGTAACTTAAAAGTGGAGAA 8075 Query 1047 AGGTATCATAACAGATGCGGAAGTTGCCCGCTTCGATAACATACGGCAGGGATTGGACTT 1106 ||| ||||| |||| ||||| ||| ||||| || | | || | ||||| Sbjct 8076 AGGCTGTATAACTGATGAAATGGTTGCTAACTTTGATAATATCAGAAACGGTCTTGACTT 8135 Query 1107 TGGTTATGGCCCTGACCCGCTTGCATTTGTACGCTGGCATTACGATAAGCGCAAGAATAG 1166 ||||||| |||| || | ||||| ||||| ||||| ||||||||| |||||| | Sbjct 8136 CGGTTATGCTACTGATCCATTAGCATTCGTACGATGGCACTACGATAAGAAAAAGAATGG 8195 Query 1167 GATATACGCCATTGATGAATTGGTTGATCATAAGGTGTCTCTGAAACGCAC--AGCG-GA 1223 || || || |||||||| ||| || || || |||| || | || || Sbjct 8196 CATCTATGCTGTTGATGAA-------ATC-TATGGAGT----GAAAATCAGTAATCGTGA 8243 Query 1224 TTTTGTGAGGAAG----AATAAATACGA-ATCAGCCAGAATC--ATTGCA---GA--CAG 1271 |||| ||| || || | | ||||| | || || |||||| || ||| Sbjct 8244 GTTTGCCCAAAAGGCGAAAGCAAAAGGTTATCAGTCTGA-TCGTATTGCATCGGATTCAG 8302 Query 1272 CTCAGAACCCCGCTCAATCGACGCATTGAAGCTGGAGCATGGCATAAACCGC--ATTGAG 1329 | |||||| || || | | |||||| || || || || | || | ||| | Sbjct 8303 C--AGAACCTAAATCCATAGCAGAATTGAACAATGAACACGGAATGAGCCACGTATTTGG 8360 Query 1330 GGTGCGAAGAAAGGCCCTGACTCAGTAGAGCATGGGGAAAGATGGTTGGATGAGCTGGAT 1389 ||| || |||||||| ||||| || || |||| || |||||||||||| ||||| Sbjct 8361 GGTT--AAAAAAGGCCCCGACTCTGTGCAGTATGGCGAGGAATGGTTGGATGATTTGGAT 8418 Query 1390 GCAATCGTTATAGACCCGCTCAGAACGCCGAATATTGCCCGTGAGTTTGAGAACATAGAT 1449 || ||| ||||| || ||||| || ||||| ||| |||||||| ||||| ||| Sbjct 8419 TTTATTTGTATCGACCCACTAAGAACTCCAAATATAGCCAAAGAGTTTGAAAACATTGAT 8478 Query 1450 TATCAGACTGATAAGAACGGAGACCCTATTCCAAGGCTTGAGGACAAGGATAACCACACC 1509 |||||||| ||||| | || | |||| ||||||||||| || || ||||||||||| Sbjct 8479 TATCAGACGGATAAAGATGGCAATCCTAAGCCAAGGCTTGAAGATAAAGATAACCACACA 8538 Query 1510 ATAGATGCCACACGGTACGCATTT 1533 || ||||| ||| | ||||| ||| Sbjct 8539 ATCGATGCAACAAGATACGCTTTT 8562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140701089544608