Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_004302.1 Length=33350 Score E Sequences producing significant alignments: (Bits) Value seq273 100 6e-17 >seq273 Length=32108 Score = 100 bits (110), Expect = 6e-17 Identities = 160/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 25794 TTGATTTAGCTGGAGCTGGTCGTGCGGTTATTGATGGATTTGTCGGTGGGCTTAAAAGCA 25853 ||||| || || |||||| | || |||| || | || | |||||||| ||| Sbjct 4737 TTGATCTATTTGCGGCTGGTAGAGCAATTATGGAAAGTTTCACTGATGGGCTTAC--GCA 4680 Query 25854 --CATGGGAAGCCG-GAAAGAAATTTGTAGGTGGAATTGCTGACTGGATTAAAGATCACA 25910 |||||||||| |||||| ||||| |||| |||| ||| ||||| ||| || | Sbjct 4679 TGCATGGGAAGCGACGAAAGAG-TTTGTCAGTGGTATTGGTGATTGGATACGAGAACATA 4621 Query 25911 AAGGTCCTATATCATATGATAGAAAAATATTGATTCCAGCAGGACAAGCTATTATGGGTG 25970 |||||||||| || ||||||||| | || |||||||| || |||| |||||||||| Sbjct 4620 AAGGTCCTATTAGTTACGATAGAAAACTTTTAATTCCAGCTGGTAAAGCGATTATGGGTG 4561 Query 25971 GATTTAATGACAGTTTGATGGAAAACTTCAAAGCTGTTCAAAAAA 26015 | || ||||| || || | | || ||| |||| ||||||| Sbjct 4560 GTTTAAATGAAAGCTTACAAGCGAGTTTTAAATCTGTCCAAAAAA 4516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 106591346650368