Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq10 118 8e-22 seq558 87.8 1e-12 >seq10 Length=3877145 Score = 118 bits (130), Expect = 8e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | || | || ||||||||| | ||||| || || || || || || ||| Sbjct 2844816 CCACCACGTAAGCGTAGAACTAAATGTAATGTGGATTCCTTCTGAATATTATAGTCGGAC 2844757 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || || || |||||||||||| | |||||||||||||| || ||| Sbjct 2844756 AGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGG 2844697 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| || || |||||| ||| || ||| | || || |||||| | || || Sbjct 2844696 ATTCCTTCCTTATCTTGAATTTTAGCT-TTGACATTCTCAATAGTATCGGAAGGCTCAAC 2844638 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || |||||||| || |||| |||||| || ||||| |||||| Sbjct 2844637 CTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCATA 2844589 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || |||||||| || || || ||||| || ||||| || || | | |||| Sbjct 2845257 AATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAGTCCGACAGGGTGCGTCCGTCC 2845198 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| || || | |||||||||||||| || |||||| || || || || Sbjct 2845197 TCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCCTCCTTATCT 2845138 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| ||| ||| | || || |||||| | || || || ||||| |||||| Sbjct 2845137 TGGATTTTGGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACTTCCAAGGTTATGGTT 2845078 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| ||||| || || ||||| ||||||||| Sbjct 2845077 TTACCGGTCAGGGTCTTCACAAAGATTTGCATA 2845045 Score = 114 bits (126), Expect = 9e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||||||||| || || ||||| |||||||||||| | | | | |||| Sbjct 2845485 AATACCAAATGAAGGGTTGATTCCTTTTGGATGTTGTAATCGGACAAAGTACGTCCGTCC 2845426 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| || || | |||||||||||||| || ||| ||||| || || || Sbjct 2845425 TCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTATCT 2845366 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || || ||| || |||| ||||| ||| ||| || || || ||||| ||| Sbjct 2845365 TGGATCTTAGCCTTAACGTTTTCGATGGTGTCGGATGGTTCGACCTCCAAAGTAATAGTT 2845306 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || || || || || || ||||||||| Sbjct 2845305 TTACCAGTAAGGGTCTTCACGAAGATTTGCATA 2845273 Score = 111 bits (122), Expect = 1e-19 Identities = 157/216 (73%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 || || || ||||| || || || ||||| |||||||| ||| | ||| || ||| Sbjct 2845029 AATACCAAGTGAAGTGTTGACTCCTTTTGGATGTTGTAGTCGG--ACAATGTGCGTCCGT 2844972 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 | || ||||| ||||||||| | || ||||||||||| || ||||| || ||||||| Sbjct 2844971 CCTCCAATTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGGGGAATACCCTCTTTGT 2844912 Query 15270 C-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 | || ||||||| || || |||| || ||||| | ||| || || | ||||| Sbjct 2844911 CTTGAATTTTTGCT-TTAACGTTTTCGATTGTATCAGAAGGTTCAACCTCCAGAGTAATT 2844853 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || |||| ||||| || || ||||||||| Sbjct 2844852 GTTTTTCCCGTCAATGTTTTAACGAAGATTTGCATA 2844817 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| |||||||| || || || || || |||||||||||| | | | ||||||| Sbjct 2844571 AACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAAGGTACGTCCGTCTTC 2844512 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||| || || | || ||||||||||| || || |||||||||||||| Sbjct 2844511 CAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCCTG 2844452 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||| || ||| || ||| |||| || |||||| ||| || || | || ||||| | Sbjct 2844451 AATCTTAGCT-TTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCT 2844393 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15371 | || |||| || || || || |||||||| || |||| Sbjct 2844392 TGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTGGAAA 2844354 >seq558 Length=79715 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | | ||||| || | || || || || || |||||||| || | Sbjct 66408 CCACCTCTAAGACGAAGGACTAAGTGTAATGTAGACTCCTTCTGAATGTTGTAGTC--TG 66351 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| || | || || |||||||| || || | || ||||| ||||| || || Sbjct 66350 CCAATGTGCGACCATCCTCCAATTGTTTTCCGGCAAAAATTAAACGCTGTTGATCTGGTG 66291 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| || || |||||| || ||| ||| || ||||| | ||| | Sbjct 66290 GAATCCCTTCCTTATCTTGGATTTTGGCTTTAACATGTTCGATAGTATCCGAAGGTTCAA 66231 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | || ||||||||||| || || |||||||| ||||||||||| Sbjct 66230 CCTCAAGAGTGATGGTTTTACCCGTAAGGGTTTTTACGAAAATTTGCAT 66182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362154604863252