Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq27 87.8 1e-12 seq558 86.0 5e-12 >seq27 Length=2235907 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 24929 CCAAAGCGCGTGTTGTTGCCACGGCTCGTCATCTTGCTCCCAGTTGTCCAAACCGCCGTC 24988 ||| ||||| || |||| ||| ||||||||||| | ||||| | | | || | | | Sbjct 797275 CCAGAGCGCATGCTGTTCCCATGGCTCGTCATCATCATCCCAATCCTTAAGGCCACAGCC 797334 Query 24989 GCAGTAAAAACATTTGACTTTGTCGCTACGGCCGGTGTAAAAGAAGCCAGCTTCTGCAAG 25048 |||| ||| || ||||| || | |||||| || |||||||| || || || | Sbjct 797335 GCAGCTAAAGCACTTGACGCGATCACCGGTGCCGGTATAGAAGAAGCCGGCATCGGCTAA 797394 Query 25049 TTTTTCGGGCCGTTGCTTCAAACCGCGTGGCCACTCTGTAAATGTGCGCAAACGCGCAGC 25108 || | ||| |||||||||| ||||||||| || | ||| | || || || || || Sbjct 797395 TTCCTTGGGACGTTGCTTCATGTTGCGTGGCCATTCGGCAAACGAACGTAAGCGTGCCGC 797454 Query 25109 TTCTATCGCATATTTGGG 25126 ||| || ||||| | ||| Sbjct 797455 TTCGATGGCATACTCGGG 797472 >seq558 Length=79715 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||| || ||||||||||| ||||| ||||| || |||| ||| | ||||||| || Sbjct 66385 GTGTAATGTAGACTCCTTCTGAATGTTGTAGTCTGCCAATGTGCGACCATCCTCCAATTG 66326 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 ||| || ||| |||| | | ||| ||||| || | || || || || ||||| Sbjct 66325 TTTTCCGGCAAAAATTAAACGCTGTTGATCTGGTGGAATCCCTTCCTTATCTTGGATTTT 66266 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 ||| || || ||| |||||| ||| || || | || ||||||||||| || Sbjct 66265 GGCTTTAACATGTTCGATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTTTTACCCGT 66206 Query 19018 TAAAGTTTTGACAAAAATTTGCATT 19042 | ||||| || |||||||||||| Sbjct 66205 AAGGGTTTTTACGAAAATTTGCATT 66181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414544646879368