Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_004996.1 Length=34692 Score E Sequences producing significant alignments: (Bits) Value seq273 98.7 2e-16 >seq273 Length=32108 Score = 98.7 bits (108), Expect = 2e-16 Identities = 213/317 (67%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 11209 GTAGATATGCGAACCTTGAACCGTAGATGGCTTCAGAAGAATAAACAATTCTTTAAGAAC 11268 ||||||||||| |||||||| | |||||| | | ||||||||||| || || || Sbjct 22212 GTAGATATGCGGACCTTGAATAAGAAATGGCTGAAAGAAAATAAACAATTTTTCAAAAAT 22153 Query 11269 TCGAATCGTAGTTTCAATGAATTTGAATTGAGTCGTCGGTTAAAAGAGCGGAATGGGCAA 11328 || || || ||| ||||||| ||||| ||| ||||| | |||||||| | Sbjct 22152 TCTAACCGAGATTTTTATGAATTCGAATTAGAAAAACGGATAAAAAACCGGAATGGAAAG 22093 Query 11329 CTTGTACCTGGGATTGAGTCTTATCTGACTTACCACGATATCAAGCATATACCGAAAGG- 11387 | |||||||| ||||| | || ||| || | || || | || |||||||| Sbjct 22092 GTCGTACCTGGTATTGAAAAGTTCTTGGATTATCATGCCATTAACAAAATTCCGAAAGGT 22033 Query 11388 ATTGGGATCAATAAGTTTCAGAATTGGGTTATCAAGAATCATATTGACTTCAATGAATAT 11447 || || || ||| ||||||||||||||||| || ||| | || | | | | || Sbjct 22032 ATAGGAATGGTTAAATTTCAGAATTGGGTTATTAAAAATAAAATCAATATGCTTTACTAC 21973 Query 11448 CTTGACTATCTCAAAATGCTACGAGAAATGGGCATCGAGCCTGAAGGCGATGCTA---TG 11504 | |||||||| || ||| || ||| | || || ||| ||| ||||||| | Sbjct 21972 TTCGACTATCTGAATATGTTAAAAGATTTAAATATAGATCCTACAGGTGATGCTAATTTA 21913 Query 11505 CTTGTACCAAAGGATTT 11521 || | || |||||||| Sbjct 21912 ATTATTCCTAAGGATTT 21896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110885462500656