Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq10 98.7 7e-16 seq48 89.7 4e-13 >seq10 Length=3877145 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 || ||||||| ||| || || ||||||||||| ||| | | || |||| ||| Sbjct 2844798 ACTAAATGTAATGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCC 2844739 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 || ||||| || || || ||||| ||||| || || | || | ||||| |||||| | Sbjct 2844738 AACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTGA 2844679 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| |||||| | ||| |||||| | ||||| || || | || || ||||| Sbjct 2844678 ATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTT 2844619 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || ||||| || || || || ||||| Sbjct 2844618 CCCGTCAAAGTTTTGACGAAAATCTGCAT 2844590 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || ||||||||||| || ||||| ||||| ||||| || || | || | || || ||| Sbjct 2845200 TCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCCTCCTTA 2845141 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 ||| ||||| || || | ||| |||||| | ||||| || || | || || Sbjct 2845140 TCTTGGATTTTGGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACTTCCAAGGTTATG 2845081 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||||||| | ||||||||||| |||||||| Sbjct 2845080 GTTTTACCGGTCAGGGTCTTCACAAAGATTTGCAT 2845046 >seq48 Length=1730007 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 ||||||||||| || || ||| ||||| || || || ||| || || |||| Sbjct 776883 AACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCT 776824 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||||||||||||| || || ||||| || || || || | || | ||| ||||| ||| Sbjct 776823 TCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATACCCTCTTTGTCT 776764 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 |||||| |||||| | | | || || | ||||| || || | || || || Sbjct 776763 TGAATTTTAGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCTAAGGTGATGGTC 776704 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| ||||| || || || || || ||||| Sbjct 776703 TTACCAGTTAATGTTTTGACGAAAATCTGCAT 776672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354753507496656