Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq10 98.7 8e-16 seq558 82.4 6e-11 >seq10 Length=3877145 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| |||||||| || || || |||||||||||| || || |||||| Sbjct 2844570 ACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAAGGTACGTCCGTCTTCC 2844511 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||| || ||| | || | | |||||||| ||| | ||||||||||| | Sbjct 2844510 AGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCCTGA 2844451 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || || ||| || | ||| || |||| ||||| |||| || ||||| ||| Sbjct 2844450 ATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTG 2844391 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 || ||||| || || || || ||||||||||| Sbjct 2844390 CCAGTCAAGGTCTTCACGAAGATTTGCATTTT 2844359 >seq558 Length=79715 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 || || |||| |||||| || || || |||||||| || ||| || | ||| ||| Sbjct 66390 ACTAAGTGTAATGTAGACTCCTTCTGAATGTTGTAGTCTGCCAATGTGCGACCATCCTCC 66331 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || ||| |||| | | ||||||||| || | ||||| || || Sbjct 66330 AATTGTTTTCCGGCAAAAATTAAACGCTGTTGATCTGGTGGAATCCCTTCCTTATCTTGG 66271 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| ||| || || | | || ||| |||||| || | || |||||||| Sbjct 66270 ATTTTGGCTTTAACATGTTCGATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTTTTA 66211 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || | ||||| || |||||||||||| Sbjct 66210 CCCGTAAGGGTTTTTACGAAAATTTGCATT 66181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419558706357732