Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq7 214 2e-50 >seq7 Length=4380649 Score = 214 bits (236), Expect = 2e-50 Identities = 487/718 (68%), Gaps = 16/718 (2%) Strand=Plus/Plus Query 12976 TAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTAT 13035 |||||| | ||||| ||||| ||||| || | |||| | | || ||||| || || Sbjct 4094561 TAACAAGCGATCAGCCACAAATTCTATATAATCGGACATTGATTTGCAATTCATACCAAT 4094620 Query 13036 TAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAAC 13095 ||| ||||| |||| ||| || ||||| || | || || || | ||| |||||| || Sbjct 4094621 TAAATTTACGGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTTTAACAGCTTCGGAAAT 4094680 Query 13096 TATGTCTCTTATTACGTTCTCTAATGGAGGATTTG-AT-AGATGCTTAAACATCATACAT 13153 || || | ||| ||||| || | | | | || || | ||| | |||||||| |||| Sbjct 4094681 GATTTCAATAATT-CGTTCATTACTTG-GCTTCTGTATCAAATGTTGAAACATCAAACAT 4094738 Query 13154 GCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCC 13213 || |||||||| |||| || || |||| |||||||| || ||||| |||| || Sbjct 4094739 GCGAAATCACAATGCAGACCCTCGTCTCGTGAGATTAGCTCATTGGAAAACGTTAAGCCA 4094798 Query 13214 GGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC--GaaaaaaaTA 13271 ||||| | || |||||||||| ||| || || | ||||| || |||||||||| Sbjct 4094799 GGCATTAAACCACGTTTTTTAAGCCAGAAGATCGACGCAAAACTTCCACTGAAAAAAATA 4094858 Query 13272 TTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTA--CTATTTTTACTCTC 13329 ||||| || |||||||| || || | | ||||||| | | | | ||| | Sbjct 4094859 --CCTTCCACAGCTGCAAATGCAATTACACGTTCACCAAAGTTTGCCGACTTTGAGGAA- 4094915 Query 13330 TATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACG-CAGTTCATATTTTCTATTGCGT 13388 ||||| ||||| | ||| || | || ||| ||| ||| |||| || || | Sbjct 4094916 -ATCCAAGCAAGTGCCCAATCTGCCTTACGCTTTACGGCAGG-CATCGTTTCAATAGCAT 4094973 Query 13389 TAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACA 13448 | |||||||| || ||| || || |||||| ||||| || |||| ||||||| Sbjct 4094974 TGAATAAATAGTTCCTTTGTTTCGAATCCTTAATATATGTATCGATTAATATACTATACA 4095033 Query 13449 TTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATA 13508 |||| ||||| | || ||||| || ||||| || ||||| ||||| | ||||||| | Sbjct 4095034 TTTCGGAATGCACGTTCTCCATAGCAATTTGAAATCCATAGAAACAACGTGCCTCTGTAA 4095093 Query 13509 CCT-GAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCA 13567 | | || || | || | |||| ||| |||| || || ||||| || || ||| || Sbjct 4095094 CTTGGACCTCCTGACT-GAATCGTTCAACTAAATTCTCATTAACAATACCATCAGATGCG 4095152 Query 13568 GCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAA 13627 |||||||| || | || ||| || || | ||| || || | | | |||| Sbjct 4095153 GCAAAAAAGGCTAATACGTGTGAGATGAAATGCCGTTCATTGTCAGTGAGACGTGCCCAA 4095212 Query 13628 TCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 || | |||||| || | ||| || |||||||| |||||||| || || | |||| Sbjct 4095213 TCATCCATATCTTTAGAAAGATCCACTTCCTCAACTGTCCAAAACGACGCTTCTGCCT 4095270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430953132523944