Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq558 168 2e-36 seq10 161 2e-34 seq48 129 1e-24 seq154 87.8 4e-12 >seq558 Length=79715 Score = 168 bits (186), Expect = 2e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || | ||| |||| ||||||||||| || |||||||| || ||||| | Sbjct 66408 CCACCTCTAAGACGAAGGACTAAGTGTAATGTAGACTCCTTCTGAATGTTGTAGTCTGCC 66349 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | || | ||| || || | ||||||||| |||||||||| | ||||||||| || || Sbjct 66348 AATGTGCGACCATCCTCCAATTGTTTTCCGGCAAAAATTAAACGCTGTTGATCTGGTGGA 66289 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| ||||| || || || ||||| |||| ||| | ||||| |||||| ||| Sbjct 66288 ATCCCTTCCTTATCTTGGATTTTGGCTTTAACATGTTCGATAGTATCCGAAGGTTCAACC 66229 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || ||||| ||||| |||||||| || || |||||| Sbjct 66228 TCAAGAGTGATGGTTTTACCCGTAAGGGTTTTTACGAAAATTTGCATT 66181 >seq10 Length=3877145 Score = 161 bits (178), Expect = 2e-34 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | ||| || | ||| | |||||| || ||||| || || || || Sbjct 2844591 ATACCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG 2844532 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | |||||||| |||||||| || ||||| |||| | |||||||| || Sbjct 2844531 GACAAGGTACGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGG 2844472 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| ||||||||||| ||||| |||||||| | |||||| ||||| Sbjct 2844471 GGGATTCCTTCTTTGTCCTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 2844412 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| ||||| | || || || || || ||||||||| Sbjct 2844411 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTG 2844358 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || |||| ||||||||| ||||| ||||||||||||||||| || || || | || || Sbjct 2844801 AGAACTAAATGTAATGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCC 2844742 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||||| ||||| ||||| | | |||||||| || || |||||||| ||||| Sbjct 2844741 TCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCT 2844682 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || ||||| ||||| || | |||||| ||| || ||||| | || || || Sbjct 2844681 TGAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTT 2844622 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | ||||| || || |||||||| Sbjct 2844621 TTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 2844590 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | ||| | || ||||| || || || || || || || | ||| | ||||| || Sbjct 2845483 TACCAAATGAAGGGTTGATTCCTTTTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTC 2845424 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | |||||| || ||||| || | | |||||||| || || ||||| || ||||| || Sbjct 2845423 CAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTATCTTG 2845364 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||||| || || || ||||| | ||| ||| ||||| ||||| | |||||||| || Sbjct 2845363 GATCTTAGCCTTAACGTTTTCGATGGTGTCGGATGGTTCGACCTCCAAAGTAATAGTTTT 2845304 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||||| || || || || || ||||| Sbjct 2845303 ACCAGTAAGGGTCTTCACGAAGATTTGCAT 2845274 >seq48 Length=1730007 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || ||||| || | || | ||| ||||| | ||||||||| Sbjct 776868 GTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCCAATTGTTTTCCG 776809 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||||||||| || || || || ||||| || ||||| || ||||| Sbjct 776808 GCGAAGATCAAACGCTGTTGATCTGGTGGGATACCCTCTTTGTCTTGAATTTTAGCTTTG 776749 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || || || ||||||| || || ||||||||||| | |||| Sbjct 776748 ACATTTTCGATGGTGTCAGATGGCTCGACCTCTAAGGTGATGGTCTTACCAGTTAATGTT 776689 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || ||||||||| || Sbjct 776688 TTGACGAAAATCTGCATTCTG 776668 >seq154 Length=581927 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 238766 AGGTTGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAGAGACCTATATT 238825 ||| |||||||||||||| | ||| | || ||| | |||| |||| |||| || || Sbjct 259819 AGGATGTATGTGGTCAATTGGCGGAGTGCATGATCAAGGATGGGCTGAACGACCAATTTT 259760 Query 238826 TGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGT 238876 ||| ||||| |||||||||||||| ||||| | || |||||||||||| Sbjct 259759 TGGTAAAGTGCGATACATGAATTATAAAGGATGTCAGCGAAAATTTGATGT 259709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151316200228976