Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq66 87.8 2e-12 >seq66 Length=1219739 Score = 87.8 bits (96), Expect = 2e-12 Identities = 179/263 (68%), Gaps = 10/263 (4%) Strand=Plus/Minus Query 5239 TCCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTA---ACCTC 5295 ||| || |||||||| ||| | ||||| || || ||||| | | ||| ||||| Sbjct 118732 TCCAGTCGAACCGAAACCACCAGCTCCGCGTTCTGTATCGTCAA---GTTTATCTACCTC 118676 Query 5296 TTGAACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTT 5355 || ||| | || | | || || || || || | || || || | ||| || || Sbjct 118675 TTCCACTTCAGGATAGAAAATACGCTCACAAATAAATTGTGCAATTCGGTCACCGGGTTT 118616 Query 5356 AACCTCAAAGTCGCTGTTTCCGAAG--TTAAACAGCACCACCCCGACATTGCCTCGGTAG 5413 ||||| ||||| | || ||| ||||||| || || || | || || |||||| Sbjct 118615 CACCTCGAAGTC--TACATCTGAATGATTAAACAATACAACACCCAAGTTTCCGCGGTAG 118558 Query 5414 TCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGT 5473 ||||| || | ||||||||||| || |||||||| | || || || ||||| || ||| Sbjct 118557 TCTTCATCTACGACGCCAGCGCCAACATCGATAAAATTCTTAACGGCGAGGCCAGAGCGT 118498 Query 5474 GGTGCTATGCGTCCGTAGCAACC 5496 || || || ||||| || |||| Sbjct 118497 GGCGCAATACGTCCATACGAACC 118475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447719214184640