Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq66 100 2e-16 >seq66 Length=1219739 Score = 100 bits (110), Expect = 2e-16 Identities = 195/286 (68%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCC 5563 || || || ||||| || || || || | ||| |||||||| || | ||||||||| Sbjct 118731 CCAGTCGAACCGAAACCACCAGCTCCGCGTTCTGTATCGTCAAGTTTATCTACCTCTTCC 118672 Query 5564 ACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACC 5623 || || || | | ||||| || || | || || |||||||| || | || ||| Sbjct 118671 ACTTCAGGATAGAAAATACGCTCACAAATAAATTGTGCAATTCGGTCACCGGGTTTCACC 118612 Query 5624 TCGAAATCGTTGTGGCCGAAG--TTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGG 5681 ||||| || | | ||| || |||| || || |||| ||| ||||||||||| Sbjct 118611 TCGAAGTCTACAT--CTGAATGATTAAACAATACAACACCCAAGTTTCCGCGGTAGTCTT 118554 Query 5682 CGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAG 5741 | |||| ||||| ||||| || ||||| || | ||| || || ||||| ||||| || | Sbjct 118553 CATCTACGACGCCAGCGCCAACATCGATAAAATTCTTAACGGCGAGGCCAGAGCGTGGCG 118494 Query 5742 CCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787 | | || || || | || || || | |||| |||| ||| || Sbjct 118493 CAATACGTCCATACGAACCCTCTGGCAATTGTACTTGCAAGTCGGT 118448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430025195543264