Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_005356.1 Length=41708 Score E Sequences producing significant alignments: (Bits) Value seq641 208 2e-49 >seq641 Length=27874 Score = 208 bits (230), Expect = 2e-49 Identities = 569/862 (66%), Gaps = 11/862 (1%) Strand=Plus/Minus Query 4291 GGATATAAAGAAGAAAAACTTTTACCAGAAGAAACAATTGATAGAATCTTCGAAGATTTA 4350 |||| ||||| ||| |||| | || ||| |||| | ||| ||| || | |||||| Sbjct 16202 GGATGGAAAGATGAAGAACTACTTCCTGAAACAACAGTGGATGAAATTTTTAATGATTTA 16143 Query 4351 ACAACGAATCATCCATTATTAGCTGACTTAGGTATTAAAAATGCTGGTTTGCGTTTGAAG 4410 |||| | | |||||||||| || ||||| | || | | ||||| || ||||| Sbjct 16142 ACAAGAGAACGTCCATTATTAAAAGAATTAGGCTTAAAGTACACAGGTTTACGCTTGAAA 16083 Query 4411 TTCTTAAAATCCGAAACTTCTGGCGTGGCTGTTTGGGGTAAAATCTATGGTGAAATTAAA 4470 |||||||||| || | || | ||||||||||||||| | || ||||||||| Sbjct 16082 ATCTTAAAATCTGATCCAAAAGGTGCCATTGTTTGGGGTAAAATTTTCGGCGAAATTAAA 16023 Query 4471 GGTCAATTAGATGCTGCGTTCAGTGAAGAAACAGCAATTCAAAATAAATTGACAGCGTTT 4530 ||||| |||||||| | ||||| ||||| |||| |||| ||| ||||| ||| Sbjct 16022 GGTCAGTTAGATGCAACCTTCAGCGAAGACGATGCAAAACAAAGCAAAGCAACAGCATTT 15963 Query 4531 GTTGTTTTACCAAAAGATTTAAATGATTTTGGTCCTGCGTGGATTGAAAGATTTGTTCGT 4590 || || |||||||| ||| || || | |||||||| |||||| || | | ||| | Sbjct 15962 GTAGTATTACCAAACGATCTATTAGAATATGGTCCTGTTTGGATTAAACGTTATGTAACT 15903 Query 4591 GTTCAAATCGAAGAAGCATTTGCAGTGGCGCTT-GAAACTGCGTTCTTAAAAGGTACTGG 4649 |||||| |||| |||||||| || | |||| ||| ||| ||| |||| || ||| Sbjct 15902 ACTCAAATTAAAGAGGCATTTGCTGTTG-GCTTCGAAGATGCTTTCCTAAATGGCGATGG 15844 Query 4650 TAAAGACCAACCGATTGGCTTAAACCGTCAAGTACAAAAAGGTG-TATCGGTAAC--TGA 4706 || || | || ||||| |||| ||| | || ||| || | || ||| || Sbjct 15843 AAACGATAAGCCTATTGGTTTAACTCGTGACTTAGCAAAGGGAGCTACTTCAAACGGTGT 15784 Query 4707 TGGTGCTTATCCAGAGAAAGAAGAACAAGGTACGCTTACATTTGCTAATCCGCGCGCTAC 4766 | |||||||||||||||||| | ||| || | || ||||| || | | Sbjct 15783 GACTACTTATCCAGAGAAAGAAGCAGCAGGAACTTTAACTTTTGCCGATGAAAAAACAGC 15724 Query 4767 GGTTAATGAATTGACGCAAGTGTTTAAATACCACTCAACTAACGAGAAAGGTAAATCAGT 4826 | |||| ||||| | || || ||||||||| || ||| || || || ||| | Sbjct 15723 GATTAAAGAATTAAAAGAAATGCGTAAATACCATTCTGTTAAAGAAAATGGCAAACGTAT 15664 Query 4827 AGCGGTTAAAGGTAATGTAACAATGGTTGTTAATCCGTCCGATGCTTTTGAGGTTCAAGC 4886 | || || || ||| || |||| | || || ||||| || || || | Sbjct 15663 TTCTGTCGCTGGGAAAGTAGTTATTGTTGCGAGCCCAGATGAAGCTTTGGATATTGAAAC 15604 Query 4887 ACAGTATACACATTTAAATGCAAATGGCGTATATGTTACTGCTTTACCATTTAATTTGAA 4946 | ||| ||| | ||||||| || | | ||||| ||||| ||| ||| Sbjct 15603 AGAGTTTACTTCTCGTAATGCAATGGGGGACTGGGTTACGAAATTACCGTTTGGATTGCG 15544 Query 4947 TGTTATTGAGTCTACAGTTCAAGAAGCAGGTAAGGTTTTAACGTACGTTAAAGGTCTATA 5006 || | || ||| | ||| || | || || ||| || | |||| |||| || Sbjct 15543 GATTGTGGAATCTGATTTCCAAAAATCTGGAAAAGTTACCACTTTTGTTAGTGGTCGTTA 15484 Query 5007 TGATGGTTATTTAGCTG--GTGGTATTAATGTTCAGA-AATTTAAAGAAACACTTGCGTT 5063 |||| |||| |||| | | |||| || ||| | ||| | ||||| | || || Sbjct 15483 CGATG--CATTT-GCTGCAGGAGCATTAGTGATCAAAGAATACGATCAAACATTAGCTTT 15427 Query 5064 AGATGATATGGATTTATACACTGCAAAACAATTTGCTTACGGCAAAGCGAAAGATAATAA 5123 ||| ||| ||||| |||||||||||||||||| | || ||||| |||| || || Sbjct 15426 AGAAGATTGTCGTTTATTCACTGCAAAACAATTTGCGTTTGGTAAAGCACAAGACAACAA 15367 Query 5124 AGTTGCTGCTGTTTGGAAATTA 5145 |||||| ||||| |||| |||| Sbjct 15366 AGTTGCAGCTGTATGGACATTA 15345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133335176960880