Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_005822.1 Length=32172 Score E Sequences producing significant alignments: (Bits) Value seq273 199 8e-47 seq1321 114 3e-21 >seq273 Length=32108 Score = 199 bits (220), Expect = 8e-47 Identities = 320/449 (71%), Gaps = 18/449 (4%) Strand=Plus/Minus Query 7085 TGGCAGATAACAAGAAGTATTACTACATGAGATTAAAAGAAAACTTCTTTGATTCTGATG 7144 ||||||| || || || |||||||| | | | | ||||| || || || ||| ||||| Sbjct 24894 TGGCAGACAATAAAAAATATTACTATCTCAAACTCAAAGATAATTTTTTCGATAGTGATG 24835 Query 7145 AAATGATTATCTTAGAAAACATGGATAACGGAGATGGGATTATTTACAGTAACATCTTAC 7204 |||||||| | |||||| ||| ||||| ||| || || |||||| Sbjct 24834 AAATGATTGTGCTAGAAAGTATGCCC------GATGGTTATATCTATTCCAATATCTTAT 24781 Query 7205 TGAAGCTTTATCTAAGAAGTTTAAAGTATGAAGGACGGTTAATGTTCAATGAAAGAATAC 7264 | || |||||| |||||||||| || |||||||| || ||||||| || ||||| |||| Sbjct 24780 TAAAACTTTATTTAAGAAGTTTGAAATATGAAGGGCGCCTAATGTTTAACGAAAGGATAC 24721 Query 7265 CTTTCAACCCTCAAATGCTTTCTACTATTGTACGT--CATCCAGTCGGTGTAGTTGAAAA 7322 | |||||| | |||||| || || | || ||| ||| || || | || ||||| Sbjct 24720 CATTCAACTCAACAATGCTATC-ACAAGTG-ACGAGGCATAGCGTTGGAGATGTCGAAAA 24663 Query 7323 AGCTCTTAAAGCGTTTGTTGATTTAGGCCTAGTTGAAGTTATGGAATAATGGAGCAATTT 7382 ||| | | | ||| ||||||| || |||| ||| | || |||||||||||||| Sbjct 24662 AGCAATACAGGTTTTTAGAGATTTAGAGCTCATTGAGGTTTTAGA-TAATGGAGCAATTT 24604 Query 7383 ATATGCTAGATATTCAAAACTTTATCGGAAAAACAACAACAGAGGCTGATAGGATAAAGG 7442 ||||| ||||||| ||||| ||||| |||||| | ||||||| || ||||| | || || Sbjct 24603 ATATGTTAGATATCCAAAATTTTATTGGAAAATCTTCAACAGAAGCAGATAGAAAAAGGG 24544 Query 7443 CTTATCGTTCTAAAATTAATAAAGAAAAAG---GTCTAGTTTC-AAATGAT-ACACAAAA 7497 |||| | |||| || |||||||||| |||| ||| | |||||| ||||| Sbjct 24543 ATTATAGACAACAAATCAAGAAAGAAAAAGACAGTCT-GTTGCTTAATGATGTGACAAAT 24485 Query 7498 GTTAGTACAAATGTAC-GACAAAAGTACA 7525 || | |||||| || | |||||| || || Sbjct 24484 GTAACTACAAACGTCCGGACAAATGTCCA 24456 Score = 141 bits (156), Expect = 2e-29 Identities = 171/228 (75%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 23340 ATATTGATTTAGCTGGTGCTGGTCGTGCGATTATTGATGGATTTGTCGGTGGGCTTAAAA 23399 || ||||| || || |||||| | || ||||| || | || | |||||||| Sbjct 4740 ATTTTGATCTATTTGCGGCTGGTAGAGCAATTATGGAAAGTTTCACTGATGGGCTTAC-- 4683 Query 23400 GCA--CATGGGAAGCCG-GAAAGAAATTTGTAGGTGGAATTGCTGATTGGATTAAAAAAC 23456 ||| |||||||||| |||||| ||||| |||| |||| ||||||||| | ||| Sbjct 4682 GCATGCATGGGAAGCGACGAAAGAG-TTTGTCAGTGGTATTGGTGATTGGATACGAGAAC 4624 Query 23457 ATAAAGGACCAATTAGTTATGATAGAAAACTACTAATTCCAGCTGGTGAAGCTATTATGG 23516 ||||||| || |||||||| ||||||||||| |||||||||||||| |||| ||||||| Sbjct 4623 ATAAAGGTCCTATTAGTTACGATAGAAAACTTTTAATTCCAGCTGGTAAAGCGATTATGG 4564 Query 23517 GTGGATTTAATGACAGTTTGATGGAAAACTTTAAAGCTGTTCaaaaaa 23564 |||| || ||||| || || | | |||||| |||| ||||||| Sbjct 4563 GTGGTTTAAATGAAAGCTTACAAGCGAGTTTTAAATCTGTCCAAAAAA 4516 >seq1321 Length=4872 Score = 114 bits (126), Expect = 3e-21 Identities = 525/815 (64%), Gaps = 67/815 (8%) Strand=Plus/Plus Query 29575 TGTATTTGCGGCAGTCGGTGACCAAGGGGTTGACTGGTCAAAATATAACGGAACTTACGG 29634 ||||||||| || || || ||||| ||||| | ||| | | || || | | | Sbjct 1953 TGTATTTGCTGCTAAAGGCGATCAAGGCGTTGATTTGTCTATTTGGAATGGGGATCAAGC 2012 Query 29635 TAATTTTGGTTATGCTCATGATAAATTTGCTTTTAGTCAAATCGGAGG---AACTTACGG 29691 | ||||||||||| ||||||||||| | || ||||| || || || || Sbjct 2013 AACATTTGGTTATGCACATGATAAATTCTCAATTTCACAAATTGGTGGGCAAAACAACTA 2072 Query 29692 TGGAACCTTTGTAGACCAAGCCACCTATGAAACGCAAGTCGCATCTGCAATTGCTCAAGG 29751 ||| | ||| | || |||| || ||| | ||||| || | | ||||||||||| Sbjct 2073 TGGGA--TTTAT-GATCAAGTTACTTATTCTAGTCAAGTAGCTAGTACGATTGCTCAAGG 2129 Query 29752 TAAACGAGCGCACACTTATATTTGGTACCAAGTCGGAGGTTCGCAAGAAGTAGCAAAAGC 29811 |||||||||||| || ||| | |||| ||| || | | | ||| |||||| Sbjct 2130 TAAACGAGCGCATACGTATGTATGGTGGCAAAACGTCCTTACCTACGAAAATGCAAAACA 2189 Query 29812 AGCACTTGACCGCTATTTACCAAAAATTCAAACGCCAAAGAATTCTATTGTAGCTTTGGA 29871 || | | || || |||||| ||| ||||||| |||||| || ||||| || || || Sbjct 2190 AGTATTAGATTACTTTTTACCTAAAGTTCAAACACCAAAGGGATCAATTGTCGCCTTAGA 2249 Query 29872 CTATGAAGGTGGAGCAAGTGGAAATAAACAGGCCAATACTGATGCGATTCTTTACGGAAT 29931 |||| || | | || | || |||| | || | || Sbjct 2250 TGCGGAAGACGGCGT---------TCAATCG------ACGGATGTAACGCTAT--GG--- 2289 Query 29932 GCGTC-GAGTA----AAAGCGGCTGGATATACTCCAATGTATTACTCTTACAAGCCTTAC 29986 |||| || || |||| |||||||||||| || ||| |||| ||||| || Sbjct 2290 GCGTTAGACTATATCAAAGAGGCTGGATATACACCGATGCTTTACGGATACAAAGGGTAT 2349 Query 29987 ---ACTTTGGCTAATGTCAATTATAAGCAAATCATCAAAGA-GTTTCCTAAATCACTATG 30042 |||| || ||| | |||| | || | |||||| || || ||| |||| Sbjct 2350 CTTACTTCATCTTATG--ATTTATCACGAATTG--CAAAGAAGTATC---AAT---TATG 2399 Query 30043 GATTGCGGCATATCCAAATTATGAAGTAACACCAGTTCCAAACTATAGCT-TTTTCCCAA 30101 ||| || | ||||||| |||||||||| ||||| |||||| || | | |||||| Sbjct 2400 GATGGCAGAATATCCAGATTATGAAGTGACACCTTATCCAAATTACAATTATTTTCCTTC 2459 Query 30102 GTATGGACGGAATTTCAGTATTC--CAGTTCACATCAACTTATGTTGCTGGCGGACTTGA 30159 | || | ||| || ||||| |||||||| ||||| || ||||| || || || || Sbjct 2460 ATTTGAA---AATATCGGTATTTTTCAGTTCACGTCAACCTACGTTGCAGGAGGGCTAGA 2516 Query 30160 TGGAAATGTTGATTTAACAGGAATCACAGGTAATGGATATGGAAAACAGAAAGGCCAAGA 30219 ||| || |||||||||||||| || || | |||||| ||| | | |||| |||| Sbjct 2517 TGGTAACGTTGATTTAACAGGTATTACTGATAATGGTTAT---ACAAAGAATAACCAACC 2573 Query 30220 AGTTAAACCCAATACTGCTACACCGGCCATTGAAAATGGTAAAGAAGCC--AATGAAGTT 30277 || ||| | || ||||| || ||||| || || ||| | || | | Sbjct 2574 AG--CAAC---AAAC----ACACCAGCAATTGATGCAGGGGAAAAAGTCGAAAATACGCC 2624 Query 30278 AAAGGAAACGATGTAGAAGTTGGAATGACGGTTAAAGTAAACTTTGGCGCTAAGAATTAT 30337 || | |||||| |||| || || |||||||| || ||| ||| | | || Sbjct 2625 AA--GTTCCGATGTTAAAGTCGGCGATACTGTTAAAGTGAAATTTAGCGTTGATGCTTGG 2682 Query 30338 GCCACAGGAGAAACAATTCCTCAATGGGTAAAAGG 30372 || ||||| ||| | ||||| |||||||||||||| Sbjct 2683 GCTACAGGTGAAGCTATTCCGCAATGGGTAAAAGG 2717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102821996075376