Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq10 91.5 1e-13 seq558 87.8 2e-12 >seq10 Length=3877145 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || || | || |||||||| | |||| ||||| ||||| || || || | Sbjct 2844817 ACCACCACGTAAGCGTAGAACTAAATGTAATGTGGATTCCTTCTGAATATTATAGTCGGA 2844758 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || | || | ||||||| ||| || || || |||| ||||| || ||||| || Sbjct 2844757 CAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGG 2844698 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| || |||||| |||| | | | || ||||||| || ||| Sbjct 2844697 GATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAAC 2844638 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || |||||||| || || | |||||| || ||||||||||| Sbjct 2844637 CTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 2844590 >seq558 Length=79715 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 ||||| || | ||| |||||| ||||||||||| || |||||| || | |||||| Sbjct 66390 ACTAAGTGTAATGTAGACTCCTTCTGAATGTTGTAGTCTGCCAATGTGCGACCATCCTCC 66331 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | || || ||| | ||||||||||||| ||||| || | | |||||| || Sbjct 66330 AATTGTTTTCCGGCAAAAATTAAACGCTGTTGATCTGGTGGAATCCCTTCCTTATCTTGG 66271 Query 48638 ATTTTCTGCTTGATAGACG--CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||||| |||| | | | | | || ||||| | || || ||| | || ||||||| Sbjct 66270 ATTTT-GGCTTTA-ACATGTTCGATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTTT 66213 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || || ||||| || ||||| ||||| Sbjct 66212 TACCCGTAAGGGTTTTTACGAAAATTTGCAT 66182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421222593357572