Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq1061 140 2e-28 >seq1061 Length=20173 Score = 140 bits (154), Expect = 2e-28 Identities = 193/270 (71%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 3875 GGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATATGCAA 3934 ||||| ||||| | ||||| || || || || || |||||||||||||||||||| ||| Sbjct 9480 GGTGTCCATTTCGTTATGGCAGATGGCGGATTTTCAGTTGAGGGTCAAGAAAATATCCAA 9539 Query 3935 GAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCATACGA 3994 ||||| | || || | | |||||||||||||||||||| ||||||| ||| | || Sbjct 9540 GAAATTCTTTCTAAGCAACTTTATTTGTGTCAATGTTTAATGGCATTGAAAATCCTTCGG 9599 Query 3995 ATTGGTGGTCATTGTGTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGTTTA 4054 || ||| || | || |||| | || || |||| ||||| |||||| || | Sbjct 9600 GTTAATGGCAGTTTTCTTTGCAAACTGTTTGACTTATTCACACCATTTAGTATAGGACTT 9659 Query 4055 GTGTATTTGATGTATAGATCTTTTAATCGTATTTGTATTTTCAAACCACATTCATCGCGA 4114 | | ||| ||||||| || |||| ||| || | ||| || || || || || Sbjct 9660 ATATTTTTAATGTATAAATGTTTTGATCAGATATCTATATTGAAGCCTAATAGTAGTAGA 9719 Query 4115 CCGGCCAATTCTGAAAGATATTTGGTGTGT 4144 ||||| ||||| ||| ||||||| || ||| Sbjct 9720 CCGGCAAATTCAGAACGATATTTAGTATGT 9749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276534819590716