Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq34 123 1e-23 seq81 118 6e-22 seq25 118 6e-22 seq108 114 7e-21 >seq34 Length=2265362 Score = 123 bits (136), Expect = 1e-23 Identities = 91/105 (87%), Gaps = 4/105 (4%) Strand=Plus/Minus Query 11429 AAATATAGAATTAA---TAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACC 11484 ||||| | |||||| ||||||| | || |||||||||| |||||||||| ||||| Sbjct 2179976 AAATAAAAAATTAAAAATAAAAAAATAGATGTGGCCCATGAGGGGATCGAACCCGCGACC 2179917 Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 2179916 TTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 2179872 >seq81 Length=1248109 Score = 118 bits (130), Expect = 6e-22 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 || || |||| |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 857485 AATAATTCAATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 857544 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 857545 GCTCTAACCAACTGAGCTAATGGGCCG 857571 Score = 118 bits (130), Expect = 6e-22 Identities = 86/98 (88%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 11432 TATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 |||| |||||| |||| || ||||||||||| |||||||||| |||||||||||| Sbjct 862975 TATATAATTAA-AAAACATGTG-TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGT 863032 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||| |||||||||||||||||||| Sbjct 863033 TATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 863070 >seq25 Length=2595154 Score = 118 bits (130), Expect = 6e-22 Identities = 92/110 (84%), Gaps = 9/110 (8%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAA--TCAAA-------TTGGCCCATGAAAGGATCGAACCTT 11479 ||| ||| ||| |||||||| ||||| ||||||||||| |||||||||| Sbjct 580060 AAAAATAATATTTATAAAAAAAATCAAAATATTAGTTGGCCCATGAGGGGATCGAACCCG 580119 Query 11480 CGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 580120 CGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 580169 Score = 114 bits (126), Expect = 7e-21 Identities = 82/96 (85%), Gaps = 7/96 (7%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAA-------TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 || ||||||||||| ||||||||||| |||||||| | |||||||||||||| Sbjct 583552 AAAAAAAAATCAAAATATTAGTTGGCCCATGAGGGGATCGAAACCGCGACCTTCGCGTTA 583493 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||||||||||||||||||| Sbjct 583492 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 583457 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 663907 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 663848 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 663847 TGAGCTAATGGGCCG 663833 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 662795 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 662736 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 662735 TGAGCTAATGGGCC 662722 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 663626 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 663567 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 663566 TGAGCTAATGGGCC 663553 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 664583 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 664524 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 664523 TGAGCTAATGGGCC 664510 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 667092 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 667033 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 667032 TGAGCTAATGGGCC 667019 >seq108 Length=866800 Score = 114 bits (126), Expect = 7e-21 Identities = 73/80 (91%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 11450 TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTR 11509 ||| | |||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 368161 TCATAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTA 368102 Query 11510 ACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| Sbjct 368101 ACCAACTGAGCTAATGGGCC 368082 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261473442459472