Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq48 123 2e-23 seq10 116 3e-21 seq558 107 2e-18 >seq48 Length=1730007 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||||||||| || | || || |||||||| | ||| || ||| || ||| | Sbjct 776886 CGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCA 776827 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||||||||| | ||||| || | || |||||||| || ||||| |||||| Sbjct 776826 TCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATACCCTCTTTG 776767 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| || ||||| ||| ||||||| | ||||| || | |||||| Sbjct 776766 TCTTGAATTTTAGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCTAAGGTGATG 776707 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 || || ||||| | ||||| || || |||||||| || Sbjct 776706 GTCTTACCAGTTAATGTTTTGACGAAAATCTGCATTCT 776669 >seq10 Length=3877145 Score = 116 bits (128), Expect = 3e-21 Identities = 157/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGG 94850 ||||| ||||| || | || ||||||||||| | ||| |||||| || ||| || | Sbjct 2845488 CGCAATACCAAATGAAGGGTTGATTCCTTTTGGATGTTGTAATCGGACAAAGTACGTCCG 2845429 Query 94851 AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||||||| ||||| ||| ||||||| || | ||| |||||||| || || || || | Sbjct 2845428 --TCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCT 2845371 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | || || ||||| ||| ||| ||||| | | ||||| || | || | Sbjct 2845370 TATCTTGGATCTTAGCCTTAACGTTTTCGATGGTGTCGGATGGTTCGACCTCCAAAGTAA 2845311 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| |||||||| || ||||| ||||| ||||| Sbjct 2845310 TAGTTTTACCAGTAAGGGTCTTCACGAAGATTTGCAT 2845274 Score = 100 bits (110), Expect = 3e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGGAATCCT 94856 ||||| || | ||||| ||||| || | ||| |||||| || || || | || | Sbjct 2844570 ACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAAGGTACGTCCG--TCTT 2844513 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 |||| ||||| ||| |||||||||| | ||| |||||||| || || ||||||||||| | Sbjct 2844512 CCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCCT 2844453 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||| || || || || | | ||| || | | || || || | |||||||| | Sbjct 2844452 GAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCT 2844393 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| | || ||||| ||||| ||||| Sbjct 2844392 TGCCAGTCAAGGTCTTCACGAAGATTTGCAT 2844362 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| ||||| || | ||| ||||||||||| | || || || || ||| Sbjct 2845260 CGCAATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAGTCCGACAGGGTGCGTCCG 2845201 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||| ||||| ||| ||||||| || | ||| |||||||| ||||| || || || Sbjct 2845200 TCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCCTCCTTA 2845141 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| ||||| || | | ||| || | | || || || | || ||| Sbjct 2845140 TCTTGGATTTTGGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACTTCCAAGGTTATG 2845081 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || || ||||||||||| ||||| Sbjct 2845080 GTTTTACCGGTCAGGGTCTTCACAAAGATTTGCAT 2845046 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 || || || || || |||||||| || | ||||| ||| || ||| ||||||| Sbjct 2844798 ACTAAATGTAATGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCC 2844739 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | |||||| || | || || || | ||| |||||||| || || ||||| || || | | Sbjct 2844738 AACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTGA 2844679 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| || ||||| | | ||| || | | || || || | |||||||||||| Sbjct 2844678 ATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTT 2844619 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | |||||| || || |||||||| Sbjct 2844618 CCCGTCAAAGTTTTGACGAAAATCTGCAT 2844590 >seq558 Length=79715 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | || ||||| || ||||| ||||| || | ||| || || | Sbjct 66408 CCACCTCTAAGACGAAGGACTAAGTGTAATGTAGACTCCTTCTGAATGTTGTAGTCTGCC 66349 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| |||||||| ||||||||| |||| ||||| | || |||||||| ||| Sbjct 66348 AATGTGCGACCATCCTCCAATTGTTTTCCGGCAAAAATTAAACGCTGTTGATCTGGTGGA 66289 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | ||||| || || || ||| ||| || | | || || Sbjct 66288 ATCCCTTCCTTATCTTGGATTTTGGCTTTAACATGTTCGATAGTATCCGAAGGTTCAACC 66229 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| ||||||||||| || ||||| ||||| || || || ||||| Sbjct 66228 TCAAGAGTGATGGTTTTACCCGTAAGGGTTTTTACGAAAATTTGCAT 66182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448259976517920