Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_006557.1 Length=41092 Score E Sequences producing significant alignments: (Bits) Value seq273 246 8e-61 >seq273 Length=32108 Score = 246 bits (272), Expect = 8e-61 Identities = 355/496 (72%), Gaps = 15/496 (3%) Strand=Plus/Minus Query 23040 GCACAAAAGGGGATTAATTCCACATTTATTGATAAAGGCGGTCATACCTGGAGCCTGGAA 23099 || ||||| |||||||| ||||| ||||| |||||||| |||||||| |||||| ||||| Sbjct 13526 GCGCAAAAAGGGATTAAGTCCACTTTTATAGATAAAGGTGGTCATACATGGAGCTTGGAA 13467 Query 23100 CGATACACGAGGACGGTTATGAAGTCCACATTAGGTAACACTTACGACAAGCTAAGAAAA 23159 |||||| || || ||| ||||||| || |||| || || | || || | ||| | Sbjct 13466 AGATACATTAGAACTGTTTTGAAGTCAACGCTAGGAAATACCTTTAACCAGTTGCGAACA 13407 Query 23160 GACCGTATGGAAGAGTATGGGGTGCATACGGTGCTTGTTACCAGCCATGTGGGAGCAAGG 23219 ||||||||| || ||||| || ||||| || |||||||| |||||| |||| || || Sbjct 13406 GACCGTATGAGTGAATATGGCGTTCATACTGTACTTGTTACTAGCCATATGGGGGCTAGA 13347 Query 23220 GACGCCTGTTCTATTATTCAGGGGAATGTAGTTGATCTGAGGTCTGTGGAGGATCTGCCA 23279 | || ||||| | ||||| || |||| |||||| | | || ||||| | Sbjct 13346 AAAGCTTGTTCAAAGATTCAAGGCCATGTGGTTGATTT-ACGT------AGGATAGTTCC 13294 Query 23280 GAGGA-CAGCGAGTATAAAAGTATCTATGATCCAGACTGGCAAGCTGATTATGAAGCGCC 23338 || | |||| | |||||||||||||| ||||| | ||||||||||| |||| | | | Sbjct 13293 TAGTAGCAGCAAATATAAAAGTATCTACGATCCTTATTGGCAAGCTGAATATGGAACCGC 13234 Query 23339 AGGCGGTCACAGGGGCGTTAATTGTGATCATCTGCATATTCCTTTTATCCCTGGTGTAAA 23398 || || || |||| || || || ||||| | || || |||||||| ||||| || || Sbjct 13233 TGGAGGCCATCGGGGAGTAAACTGCAATCATTTACACATCCCTTTTATTCCTGGCGTTAA 13174 Query 23399 TACGAATAACCAGCCGAAAATTGACATGAAACTGAATGCACAAGTTGCCCA---GGCTAA 23455 ||||| || || |||||| |||| | ||| |||| | ||||||| || | ||| Sbjct 13173 CACGAACAATCAACCGAAAGTTGATACAAAAGAAAATGAAAAAGTTGCTCAATTGACTA- 13115 Query 23456 AGACAGGCAGCGTCAGATTGAGCGTGAAATTGTCAGGTACAAAAAGAATCTGATGGTGGC 23515 | | || || || | || || |||| || | || ||||||||||| ||| | | Sbjct 13114 --AGCGTCAACGGCAACTGGAACGCCAAATAGTTAAGTTCAAAAAGAATCAAATGATTTC 13057 Query 23516 TG-AGCATATGGAAAG 23530 || ||||| ||| || Sbjct 13056 TGAAGCATTAGGACAG 13041 Score = 170 bits (188), Expect = 5e-38 Identities = 570/864 (66%), Gaps = 30/864 (3%) Strand=Plus/Minus Query 26029 GAGTTAATCAGTTTAAGCTGGCCCTGTGTGCCCAAATCGAATACTTTGACGCTTTAGGTG 26088 |||| || |||||||| || || |||||||| ||||| || |||| || | | |||| Sbjct 10837 GAGTGAAACAGTTTAAACTCGCTCTGTGTGCGCAAATAATGTATTTTGTCGATGTTGGTG 10778 Query 26089 CAACAACATTCGAAGAGATAAACAATTCGCCACAGA-CATTTCAGGCAGGGAGAACGAGC 26147 | || | ||| || |||||| | || || | | |||||| |||| | ||||| Sbjct 10777 CGGATACGTATGAAAGTATCAACAATGCCCCTCAAAGCTTTTCAG-CAGGCCGTACGAGT 10719 Query 26148 GTATCTAATGCCAGCCGGTACAATCCATCAGGAGCTAACGAAAGTAAGCCTCTGGTGGCT 26207 | ||||||||||| || |||||||| || ||| ||||||||||||| | || || Sbjct 10718 ATTTCTAATGCCAGTCGCTACAATCCTTCTGGAAATAACGAAAGTAAGTCGTTGACTGCC 10659 Query 26208 GAGGACGTTTACATTTATCTTCAGGGAACAGGGCTTCTCTTTCAGGGGGTGAAAACATGG 26267 || |||||||| | ||||| | || ||||| | | | || || || |||| Sbjct 10658 GAAGACGTTTATTTGTATCTGGAAGGTACAGGTTTGTTATATCGAGGTGTTTCGTCATGC 10599 Query 26268 TAATGCCCAAGCCTCCTATAGATTTTCTAGTGGATTCATTTATGTACAAAGAGTACATGG 26327 ||||||| ||||| || | | | || |||| ||||| ||| ||| ||||||||| | | Sbjct 10598 TAATGCCAAAGCCACCCAAAAAGTTCTTAGTTGATTCCTTTGAGTATAAAGAGTACTTAG 10539 Query 26328 GAGAAAACAGTTGGTCAGAACCTGAGTATGCAAG--ACCTGTATTGATT-AGTAATTGTC 26384 | ||| | |||| | || ||||| |||| ||| | | ||| |||| ||| | Sbjct 10538 GGGAAGGCGATTGGAACAAGCC--AGTATACAAGGAACCGATCCTTATTGAGTA-TTGCC 10482 Query 26385 GTATAGATCGGGGAGCTGAGTACACCTCAACTACATCCGGAAGGCAGCTGCTATATAATG 26444 | || || | ||| | || |||| | || ||| | ||| |||| ||||| | Sbjct 10481 GAATTGACAGAGGAAGCCAATATACCTTTTCATCAAGCGGTAAACAGTTGCTCTATAACG 10422 Query 26445 CAGTTGTTTTTTGTTATGAGGGAATGACTACCCCCCTGCCGCAGTTTAAAGCACAGTCTG 26504 | | |||| |||||| | ||| |||||| ||| | || | || |||| ||| || Sbjct 10421 GATTGATTTTCTGTTATCACGGATTGACTATGCCCTTTCCTGAATTCAAAGAACAATCAT 10362 Query 26505 TTCTTCACTTTGATGGGCGGGATCATGTGATAACTAAAGTAATCCCTAACCATGAAGCTT 26564 | || | |||||| ||| || || || |||||| | || | ||||| | Sbjct 10361 TGGTTATTTATGATGGTAAGGAACACGTAATCACTAAAATTGATACTGTCATAGAAGCCT 10302 Query 26565 AC--AGCAAA-ACCCTCTACTCCTACGAGCTGGAGGTGGTCTGATGCCTAAAATTAGAGT 26621 | |||| || | || || || ||| | ||||| |||||||| | ||| || Sbjct 10301 ATCAAGCAGCCACTATTTATTCTTATGAGATTGAGGTAGTCTGATGGGGA---TTAAGGT 10245 Query 26622 GGAGTTAAGCGGAGCTAAGGAT-AAACTGAGCCCTCAAACACAACGTAGAGGGCAATATG 26680 | |||||||| | |||| | ||| | |||||| | || | |||| ||||| Sbjct 10244 AAATTTAAGCGGTG-TAAGAACCAAAGTAAGCCCTGAGGCAATGAGACGAGGCAGATATG 10186 Query 26681 CAATGGCGAACCA---GATGCTTCAGGATATGAACCAGTTTGTTCCGATGGAAGAAGGG- 26736 | ||| || || |||| ||| |||||||||| ||||| || | | ||||| Sbjct 10185 CGCTGGGTAATCAAGCGATGG--CAG-ATATGAACCAATTTGTACC-ACGAAAGAATAAT 10130 Query 26737 ATTTTAAGGTTAACCGGAAACATTAGCA-GCGATGCAGAGGAAATCTACTACAATACGCC 26795 ||||||||| || || | ||| || || ||| || | || ||| ||| Sbjct 10129 ATTTTAAGGCAAAGCGTTCAT-TTATCAAGCAATGGTGAAAAGATTATTTACGGCACGAA 10071 Query 26796 ATACGCCAAAAGGCGATTTTAT--GAACCAGCCTATAACTACACCACTCCTGGCACAGGG 26853 |||||| ||| | | ||||||| |||| | | || || ||||| || || || ||| Sbjct 10070 ATACGCGAAACGTCAATTTTATTTGAAC--GGAAAAAAATATACCACACCAGGTACTGGG 10013 Query 26854 CCAAGATGGGATATGAAGGCAAAA 26877 |||||||||||| | || |||||| Sbjct 10012 CCAAGATGGGATTTAAAAGCAAAA 9989 Score = 109 bits (120), Expect = 1e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 27418 TAGCGAAATATATTTCCACTATTGGGGATGACACCAACGAAGAAACAGAAGACGAGGCAT 27477 |||| ||||||||||| || ||||| ||||| | ||||||||||||| || || | Sbjct 9410 TAGCAAAATATATTTCAACCATTGGTGATGATTCAGACGAAGAAACAGATGATACGGGCT 9351 Query 27478 TCTATGATGGGGATGGCACGCCGGAAACAACCGTTATCTCCGTTGCACAAGGCTACACAC 27537 | |||||||| ||||| ||||| ||||| || || | || || | || |||| Sbjct 9350 TTTATGATGGTGATGGAACGCCTGAAACGACTGTAGTATCAGTATCTGGTACGTATACAC 9291 Query 27538 CTGAAGGGTATTACGACCCGGAAGACCCTGCACAGGCATTGATTGCAGGGCTTAAATACA 27597 ||||||| ||||| | |||||||| ||||| ||| ||||| | ||||||| Sbjct 9290 CTGAAGGCATGTACGATGCTGAAGACCCAGCACAACAATTAATTGCTAGTAAAAAATACA 9231 Query 27598 AAACGGGAGACGGCCGAAAGATTTGGCA 27625 || || || ||||| || |||||||| Sbjct 9230 AATTAGGTGATGGCCGTAAAATTTGGCA 9203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131364107390256