Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq40 102 1e-17 >seq40 Length=2204548 Score = 102 bits (112), Expect = 1e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || ||||| ||||| || || || ||| |||| ||||||||| Sbjct 722611 CTACGTGATAACATCCAGGGCATCACAAAGCCGGCCATTCGCCGTTTGGCACGTCGTGGT 722552 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 || || || ||| | ||||| ||| | |||||||| | ||||| ||| |||||| Sbjct 722551 GGTGTAAAACGTATTTCTGGTTTGATTTATGAAGAAACTCGTGGTGTCTTGAAG 722498 Score = 82.4 bits (90), Expect = 1e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 16582 CGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCAT 16641 |||||| | |||||| || ||| ||||||||||| || ||||| || |||||| | || Sbjct 722408 CGTTATTCGTGATGCCGTCACCTACACCGAGCACGCCAAGCGTAAAACGGTCACCGCTAT 722349 Query 16642 GGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || || || ||||| || ||||| || | | || |||||||| ||||| Sbjct 722348 GGATGTTGTATACGCCTTGAAGCGCCAAGGTCGCACCCTCTACGGTTTTGGCGGTTAA 722291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070105481396