Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_006647.1 Length=8785 Score E Sequences producing significant alignments: (Bits) Value seq3411 87.8 1e-13 seq39 78.8 5e-11 seq8 78.8 5e-11 >seq3411 Length=1443 Score = 87.8 bits (96), Expect = 1e-13 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 1138 AAACAATAACTTCCCGATTTTTGAAAATCTTCAATTTTCTTAGCGGGAAGTTAAAAATTT 1197 || |||||||||||||||||| |||||| || ||||||||| |||| |||||||||| || Sbjct 1293 AACCAATAACTTCCCGATTTTAGAAAATTTTTAATTTTCTTCGCGGAAAGTTAAAAAGTT 1234 Query 1198 GACATTTA 1205 ||||||| Sbjct 1233 AACATTTA 1226 >seq39 Length=2261951 Score = 78.8 bits (86), Expect = 5e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 1138 AAACAATAACTTCCCGATTTTTGAAAATCTTCAATTTTCTTAGCGGGAAGTTAAAAAT 1195 || |||||||||||||||||| |||||| || ||||||||| |||| ||||||||||| Sbjct 1058777 AACCAATAACTTCCCGATTTTAGAAAATTTTTAATTTTCTTCGCGGAAAGTTAAAAAT 1058834 >seq8 Length=4729045 Score = 78.8 bits (86), Expect = 5e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 1138 AAACAATAACTTCCCGATTTTTGAAAATCTTCAATTTTCTTAGCGGGAAGTTAAAAAT 1195 || |||||||||||||||||| |||||| || ||||||||| |||| ||||||||||| Sbjct 2618879 AACCAATAACTTCCCGATTTTAGAAAATTTTTAATTTTCTTCGCGGAAAGTTAAAAAT 2618936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27995045020592