Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_006656.1 Length=12682 Score E Sequences producing significant alignments: (Bits) Value seq5 91.5 1e-14 seq35 87.8 1e-13 >seq5 Length=5596510 Score = 91.5 bits (100), Expect = 1e-14 Identities = 127/177 (72%), Gaps = 1/177 (1%) Strand=Plus/Minus Query 8108 AAGCTAAGCAGCTGATATCATGGAGAAAGTGAGCGTCAAtttttttCGAGGTAGGTGTCT 8167 |||| || |||| | ||| ||||||||||| | | ||||||||||||| | || | Sbjct 882354 AAGCCAATCAGCCGGAATCGTGGAGAAAGTGCG-AACCCTTTTTTTCGAGGTGAGAGTGT 882296 Query 8168 TTAGACCACTATAACTTCAATTCTACTGAATGTTTTTAGCTCAAAATTTAACTGTACACT 8227 | ||| |||| ||||| | |||||| ||| ||||||||| ||||||| | || ||| Sbjct 882295 TCAGAACACTGTAACTCCTATTCTAGACAATATTTTTAGCTTAAAATTTTCATTTATACT 882236 Query 8228 CTTGAAATATGTATaaaaaaaTGGTAGAAAGTTCAAAGTTCCATGTCTTTATTGGTC 8284 | ||||||| | || ||||| || || | || ||| || | |||| ||||| Sbjct 882235 GTCGAAATATAAGTTAATAAATGATAATAAACTTAAGTTTCTATCTATTTACTGGTC 882179 >seq35 Length=2369029 Score = 87.8 bits (96), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 8108 AAGCTAAGCAGCTGATATCATGGAGAAAGTGAGCGTCAAtttttttCGAGGTAGGTGTCT 8167 |||| || |||| | ||||||||||||||| | | ||||| ||||| ||| | ||| | Sbjct 830575 AAGCCAAACAGCCGGAATCATGGAGAAAGTGCGAGCCAATTGTTTTC-AGGCGGTTGTGT 830517 Query 8168 TTAGACCACTATAACTTCAATTCTACTGAATGTTTTTAGCTCAAAATTTAACTGTACACT 8227 | ||| | |||||||| |||||| ||| | ||| || |||||||| | |||||| Sbjct 830516 TCAGAACGCTATAACTCATGTTCTACACAATATATTTTACTTAAAATTTATATTTACACT 830457 Query 8228 CTTGAAATATGTATaaaaaaaTGGTAGAAAGTTCAAAGTTCCATGTCTTT 8277 | ||||||| | | || ||| | || || | |||| || || | ||| Sbjct 830456 ATCGAAATATATGTTAATAAACGATAATAAACTTAAAGCTCTATCTATTT 830407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40464663313568