Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_006657.1 Length=19820 Score E Sequences producing significant alignments: (Bits) Value seq113 96.9 4e-16 seq139 95.1 2e-15 seq424 89.7 7e-14 seq587 84.2 3e-12 seq965 80.6 3e-11 >seq113 Length=922060 Score = 96.9 bits (106), Expect = 4e-16 Identities = 189/267 (71%), Gaps = 22/267 (8%) Strand=Plus/Minus Query 11325 AAAATTTTAGCTCTTAATATTAACTTTAAGATTGTCCGCG-CTC-TGAT-CTAAGTTTCT 11381 ||||||| ||| || |||||||| |||||| ||||||| | | || | ||| |||| Sbjct 487639 AAAATTTGAGCCCTAAATATTAATATTAAGACTGTCCGCATCGCGTGTTTCTA--TTTCC 487582 Query 11382 CATAGAAATAACATGGAAAAAATTTTATT-TGTGC---TTTAGAATTCCATAACT---CT 11434 | || ||||||||||||||| ||||| ||||| ||| ||||| || || || Sbjct 487581 CGTAAGAATAACATGGAAAAA---TTATTCTGTGCACTTTTTGAATTTTATTGCTAGTCT 487525 Query 11435 GCCATGAATAAATCAAAAGTTA--TCAATTGTATCATATTTATTGTAAATTCAACGCTCT 11492 | |||| || | ||||| | || | | | || ||| | | |||| |||||||| Sbjct 487524 GTCATGTATTATAAAAAAGAGACTTCCACT-TGTC---TTTGTAGAGAATTGAACGCTCT 487469 Query 11493 ACAAAAAAGTTATCTTATGATTTTTCGCTAAATGTATTGGCTTAAGAGTTATTTGAGCTC 11552 ||||||||| | || ||| |||||| | ||| || | | ||| |||||||| || | Sbjct 487468 ACAAAAAAGGTCTCCTATAATTTTTTGAGAAACCTAATAGTTTACAAGTTATTTAAGACC 487409 Query 11553 AAAATTCAATTGATAGATAATTATTAA 11579 ||| || |||| || || |||| |||| Sbjct 487408 AAAGTTTAATTTATCGAAAATT-TTAA 487383 >seq139 Length=644794 Score = 95.1 bits (104), Expect = 2e-15 Identities = 184/264 (70%), Gaps = 16/264 (6%) Strand=Plus/Minus Query 11325 AAAATTTTAGCTCTTAATATTAACTTTAAGATTGTCCGC---GCTCTGATCTAAGTTTCT 11381 ||||||| ||| ||||||||||| |||||| ||||||| ||| |||| |||| Sbjct 305438 AAAATTTGAGCCCTTAATATTAATATTAAGACTGTCCGCATCGCTTGTTTCTA--TTTCC 305381 Query 11382 CATAGAAATAACATGGAAAAAATTTTATTTGTGCTTTA-GAATTCCATAACT---CTGCC 11437 | || ||||||||||||||| | || | || |||| ||||| || || ||| | Sbjct 305380 CGTAAGAATAACATGGAAAAATTATTCTCTGCACTTTTTGAATTGTATTGCTAGTCTGTC 305321 Query 11438 ATGAATAAATCAAAAGTTA--TCAATTGTATCATATTTATTGTAAATTCAACGCTCTACA 11495 ||| || | ||||| | || | | | || ||| | | |||| ||||||||||| Sbjct 305320 ATGTATTATAAAAAAGAGACTTCCACT-TGTC---TTTGTAGAGAATTGAACGCTCTACA 305265 Query 11496 AAAAAGTTATCTTATGATTTTTCGCTAAATGTATTGGCTTAAGAGTTATTTGAGCTCAAA 11555 |||||| | | ||| |||||| | ||| || | | ||| ||||||| || |||| Sbjct 305264 AAAAAGGTCTTCTATAATTTTTTGAGAAACCTAATAGTTTACAAGTTATTCAAGACCAAA 305205 Query 11556 ATTCAATTGATAGATAATTATTAA 11579 || |||| || || |||| |||| Sbjct 305204 GTTTAATTTATCGAAAATT-TTAA 305182 >seq424 Length=101602 Score = 89.7 bits (98), Expect = 7e-14 Identities = 181/259 (70%), Gaps = 15/259 (6%) Strand=Plus/Plus Query 11325 AAAATTTTAGCTCTTAATATTAACTTTAAGATTGTCCGCG-CTC-TGAT-CTAAGTTTCT 11381 ||||||| ||| ||||||||||| |||||| ||||||| | | || | ||| |||| Sbjct 20430 AAAATTTGAGCACTTAATATTAATATTAAGACTGTCCGCATCGCGTGTTTCTA--TTTCC 20487 Query 11382 CATAGAAATAACATGGAAAAAATTTTATTTGTGCTTTA-GAATTCCATAACT---CTGCC 11437 | || |||| |||||||||| | || | || |||| ||||| || || ||| | Sbjct 20488 CGTAAGAATAGCATGGAAAAATTATTCTCTGCACTTTTTGAATTTTATTGCTAGTCTGTC 20547 Query 11438 ATGAATAAATCAAAAGTTA--TCAATTGTATCATATTTATTGTAAATTCAACGCTCTACA 11495 ||| || | ||||| | || | | | || ||| | | |||| ||||||||||| Sbjct 20548 ATGTATTATAAAAAAGAGACTTCCACT-TGTC---TTTGTAGAGAATTGAACGCTCTACA 20603 Query 11496 AAAAAGTTATCTTATGATTTTTCGCTAAATGTATTGGCTTAAGAGTTATTTGAGCTCAAA 11555 |||||| | || ||| ||||| | ||| || | | ||| ||||||| || |||| Sbjct 20604 AAAAAGGTCTCCTATATTTTTTTGAGAAACCTAATAGTTTACAAGTTATTCAAGACCAAA 20663 Query 11556 ATTCAATTGATAGATAATT 11574 ||| |||| || || |||| Sbjct 20664 ATTTAATTTATCGAAAATT 20682 >seq587 Length=45454 Score = 84.2 bits (92), Expect = 3e-12 Identities = 183/265 (69%), Gaps = 18/265 (7%) Strand=Plus/Plus Query 11325 AAAATTTTAGCTCTTAATATTAACTTTAAGATTGTCCGCG-CTC-TGAT-CTAAGTTTCT 11381 ||||| | ||| ||| ||||||| |||||| ||||||| | | || | ||| |||| Sbjct 23467 AAAATGTGAGCCCTTGATATTAATATTAAGACTGTCCGCATCGCGTGTTTCTA--TTTCC 23524 Query 11382 CATAGAAATAACATGGAAAAAATTTTATTTGTGCTTTA-GAATTCCATAACT---CTGCC 11437 | || || |||||||||||| | || | || |||| ||||| || || ||| | Sbjct 23525 CGTAAGAACAACATGGAAAAATTATTCTCTGCACTTTTTGAATTTTATTGCTAGTCTGTC 23584 Query 11438 ATGAATAAATCAAAAGTTAT---CAATTGTATCATATTTATTGTAAATTCAACGCTCTAC 11494 ||| || | ||||| || || |||| | || | | |||| |||||||||| Sbjct 23585 ATGTATTATAAAAAAGAGATTTCCACTTGTCT-----TTGTAGAGAATTGAACGCTCTAC 23639 Query 11495 AAAAAAGTTATCTTATGATTTTTCGCTAAATGTATTGGCTTAAGAGTTATTTGAGCTCAA 11554 ||||||| | || ||| |||||| | ||| || | | ||| ||||||| || ||| Sbjct 23640 AAAAAAGCTCTCCTATAATTTTTTGAGAAACTTAATAGTTTACAAGTTATTCAAGACCAA 23699 Query 11555 AATTCAATTGATAGATAATTATTAA 11579 | || |||| || || |||| |||| Sbjct 23700 AGTTTAATTTATCGAAAATT-TTAA 23723 >seq965 Length=47139 Score = 80.6 bits (88), Expect = 3e-11 Identities = 183/264 (69%), Gaps = 16/264 (6%) Strand=Plus/Plus Query 11325 AAAATTTTAGCTCTTAATATTAACTTTAAGATTGTCCGCG-CTC-TGAT-CTAAGTTTCT 11381 ||||||| ||| | ||||||||| |||||| ||||||| | | || | ||| |||| Sbjct 18718 AAAATTTGAGCCCATAATATTAATATTAAGACTGTCCGCATCGCGTGTTTCTA--TTTCC 18775 Query 11382 CATAGAAATAACATGGAAAAAATTTTATTTGTGCTTTA-GAATTCCATAACT---CTGCC 11437 | || ||||||||| ||||| | || | || |||| ||||| || || ||| | Sbjct 18776 CGTAAGAATAACATGAAAAAATTATTCTCTGCACTTTTTGAATTTTATTGCTAGTCTGTC 18835 Query 11438 ATGAATAAATCAAAAGTTA--TCAATTGTATCATATTTATTGTAAATTCAACGCTCTACA 11495 ||| || | ||||| | || | | | || ||| | | |||| ||||||||||| Sbjct 18836 ATGCATTATAAAAAAGAGACTTCCACT-TGTC---TTTGTAGAGAATTGAACGCTCTACA 18891 Query 11496 AAAAAGTTATCTTATGATTTTTCGCTAAATGTATTGGCTTAAGAGTTATTTGAGCTCAAA 11555 |||||| | || || |||||| | ||| || | | ||| ||||||| || |||| Sbjct 18892 AAAAAGGTCTCCCATAATTTTTTGAGAAACCTAATAGTTTACAAGTTATTCAAGACCAAA 18951 Query 11556 ATTCAATTGATAGATAATTATTAA 11579 || |||| || || |||| |||| Sbjct 18952 TTTTAATTTATCGAAAATT-TTAA 18974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 63301521457588