Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_006659.1 Length=41573 Score E Sequences producing significant alignments: (Bits) Value seq3186 100 8e-17 >seq3186 Length=1548 Score = 100 bits (110), Expect = 8e-17 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 40132 AATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTAAT 40191 ||||||| | ||||| ||| |||||||||||| || | |||| |||| | || | | Sbjct 857 AATAACTCTGAAACGACTTGACCGATTAATTCTGAAGAGTAATCAGCTTTCGACTCTGAA 798 Query 40192 AAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATCGT 40251 ||| ||||||||| |||| | || | |||| ||||||||| | ||||||||| |||||| Sbjct 797 AAATCACGTCGATGGCTGCAAACCGGCTCAAAATCGGTTGAATGGTTCGTGAGATATCGT 738 Query 40252 TGACGAAA 40259 || |||| Sbjct 737 TGCTGAAA 730 Score = 86.0 bits (94), Expect = 2e-12 Identities = 128/179 (72%), Gaps = 12/179 (7%) Strand=Plus/Minus Query 40130 GGAATAACTTTTAAACGGCTTTACCGATTAAT-------TCCAAAAACTAATTAGCTCTT 40182 || |||| || |||||| || || |||| ||| |||| |||||||| ||| ||| Sbjct 1021 GGGATAAATTCTAAACGCCTATATCGATCAATATCCATATCCATAAACTAATCAGCACTT 962 Query 40183 AACATTAATAAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTG 40242 ||| | | | || ||| ||||| | | | || |||||| |||| | ||| ||| || Sbjct 961 AACCTCACAATACTACGCCGATTACCGCAAACCGGGTCAAAATCGATCAATT--TTCTTG 904 Query 40243 --AGTTATCGTTGACGAAAGAAAACCGAAAAAAG-TGTTTTTTCGGAATTACTCCGAAA 40298 || ||||||||||||||||| || |||| | | |||||| | ||| |||| |||| Sbjct 903 CAAGAAATCGTTGACGAAAGAAATCCAAAAATTGATTTTTTTTTGAAATAACTCTGAAA 845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132903205545240