Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_006660.1 Length=20197 Score E Sequences producing significant alignments: (Bits) Value seq3186 91.5 2e-14 >seq3186 Length=1548 Score = 91.5 bits (100), Expect = 2e-14 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 9898 ACGATATCTCTCGAACGAATCAACCGATTTTGACCAGCTTGGTGGCAATCGACGTGGTTT 9957 |||||||||| ||||| | |||||||||||||| | | || | || ||||||||| ||| Sbjct 738 ACGATATCTCACGAACCATTCAACCGATTTTGAGCCGGTTTGCAGCCATCGACGTGATTT 797 Query 9958 TTTGATGTTAAGAGCTGATTAGTTTTTGGAATTGATCGGTAGAGCTATTTAAAAGTTATT 10017 || || | ||||||||| | || ||||| |||||| || ||| | ||||||| Sbjct 798 TTCAGAGTCGAAAGCTGATTACTCTTCAGAATTAATCGGTCAAGTCGTTTCAGAGTTATT 857 Query 10018 CCAAAAAA 10025 ||||||| Sbjct 858 TCAAAAAA 865 Score = 80.6 bits (88), Expect = 3e-11 Identities = 84/111 (76%), Gaps = 7/111 (6%) Strand=Plus/Plus Query 9922 CGATTTTGACCAGCTTGGTGGCAATCGACGTGGTTTTTTGATGTTAAGAGCTGATTAGTT 9981 ||||||||||| | || | || ||||| ||| || || ||| |||||| ||||||||||| Sbjct 917 CGATTTTGACCCGGTTTGCGGTAATCGGCGTAGTATTGTGAGGTTAAGTGCTGATTAGTT 976 Query 9982 TTTGGA-------ATTGATCGGTAGAGCTATTTAAAAGTTATTCCAAAAAA 10025 | |||| |||||||| || || |||| || |||| |||||||| Sbjct 977 TATGGATATGGATATTGATCGATATAGGCGTTTAGAATTTATCCCAAAAAA 1027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 64507843733760