Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq7 212 7e-50 >seq7 Length=4380649 Score = 212 bits (234), Expect = 7e-50 Identities = 478/714 (67%), Gaps = 14/714 (2%) Strand=Plus/Plus Query 21290 CCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAA 21349 ||||| || ||| || | ||| || |||||||||||||| | ||||| ||| ||| Sbjct 4094550 CCCAGCTCGACTAACAAGCGATCAGCCACAAATTCTATATAATCGGACATTGATTTGCAA 4094609 Query 21350 TTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACG 21409 |||||||| || || ||||| || | ||| | || || || || || || || Sbjct 4094610 TTCATACCAATTAAATTTACGGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTTTAACA 4094669 Query 21410 GCTTCAACAATTATATTTATTATCC-TAGATGTACTAGGGGGATACAATAATTGTTTAAA 21468 ||||| ||| || | || || | | || |||| || | | || |||| ||| Sbjct 4094670 GCTTCGGAAATGATTTCAATAATTCGTTCAT-TACTTGGCTTCTGTATCAAATGTTGAAA 4094728 Query 21469 CATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAA 21528 |||||||||||| ||||||||||||| ||| || || | |||| ||||| ||||| Sbjct 4094729 CATCAAACATGCGAAATCACAATGCAGACCCTCGTCTCGTGAGATTAGCTCATTGGAAAA 4094788 Query 21529 TGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCT 21586 ||||| || |||||||| || | ||||| | ||| || || |||||||| | | || Sbjct 4094789 CGTTAAGCCAGGCATTAAACCACGTTTTTTAAGCCAGAAGATCGACGCAAAACTTCCACT 4094848 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACC---GTATGTAGAT 21643 |||| ||||| || || || || |||||||||| || |||||||| || || || Sbjct 4094849 GAAA--AAAATACCTTCCACAGCTGCAAATGCAATTACACGTTCACCAAAGTTTGCCGA- 4094905 Query 21644 TCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGT 21702 |||| || ||||| |||||| | |||||| ||||| || | || || Sbjct 4094906 -CTTTGAGGAA-ATCCAAGCAAGTGCCCAATCTGCCTTACGCTTTACGGCAGGC-ATCGT 4094962 Query 21703 ATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNN 21762 |||||||| || || | || || ||| | ||| | || Sbjct 4094963 TTCAATAGCATTGAATAAATAGTTCCTTTGTTTCGAATCCTTAATATATGTATCGATTAA 4095022 Query 21763 NNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCT 21822 |||||||||||| ||||| | || || || || || |||||||| || ||||| | Sbjct 4095023 TATACTATACATTTCGGAATGCACGTTCTCCATAGCAATTTGAAATCCATAGAAACAACG 4095082 Query 21823 TGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCC 21882 |||||||| | ||| ||||| | ||||||| | | || || ||||| || || || Sbjct 4095083 TGCCTCTGTAACTTGGACCTCCTGACTGAATCGTTCAACTAAATTCTCATTAACAATACC 4095142 Query 21883 ATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAA 21942 |||| ||||||||||| || |||| | | || |||| ||||| || || || | Sbjct 4095143 ATCAGATGCGGCAAAAAAGGCTAATACGTGTGAGATGAAATGCCGTTCATTGTCAGTGAG 4095202 Query 21943 TTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 | |||||| | |||||| || | ||| ||||| ||| ||||||||| Sbjct 4095203 ACGTGCCCAATCATCCATATCTTTAGAAAGATCCACTTCCTCAACTGTCCAAAA 4095256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531863753109280