Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq71 459 3e-124 seq7 304 2e-77 >seq71 Length=1348405 Score = 459 bits (508), Expect = 3e-124 Identities = 1248/1887 (66%), Gaps = 44/1887 (2%) Strand=Plus/Plus Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045 ||||| | ||||||||| || | | | ||| || ||||| |||| || ||||| ||| Sbjct 494640 TTGTCAACTGTGAATTGTATAGCATTTGCTGCTGGCTTCGTGCGTAAGTAATACATGCCC 494699 Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105 ||||| || || |||| || ||||| || ||| || || ||| ||| | || Sbjct 494700 GTTTTGAGTCCTGCTTTCCAACCATAAAAGTGTATAGAGGTGAGCTTGCCATAGTTGGGC 494759 Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165 || || | || ||||| | ||||| |||||||||||||| || || | ||||||||| Sbjct 494760 TCGGCCACGTGTATATTGAACGATTGGCTTTGATCGATGAATGCGCCACGATCTGCAGCC 494819 Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATAT- 62223 ||||| ||| || || || ||| ||||||| ||| || || | |||| | |||| Sbjct 494820 ATTTTGATGGAGGTTTTCACTGAAATCTCCCAAACAGTCTTGTACAGATCGCGT-ATATG 494878 Query 62224 CTTCTGGAAGGTTT--GTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 62281 ||| | | ||||| | || || || || |||| || || ||||| |||| || || Sbjct 494879 TTTCGGTATGGTTTCAATGTTTTGTATAGAACCACGATGTGTTATAATGGTATTTTTCAT 494938 Query 62282 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTC-TAAGGAGATGCGGATTAACTACTT 62340 ||||||| ||| || |||||| | | | | ||| || || |||| || |||| Sbjct 494939 ATCATCATCCCACAAACCCAACTCGGTGAGATCGCGTAACAAG-TGATGATTGACAACTT 494997 Query 62341 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62400 | ||||| || || | || | || || |||||||| || |||||||| | ||||| Sbjct 494998 GGAATTCACCCGAAAGCACACGACGTGTATAAATATTCGAAGTGTACGGTTCAAACGACT 495057 Query 62401 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62460 ||||||| |||| |||||| || || || ||||| ||||| ||||| | ||| || | Sbjct 495058 CATTATTGCCCATAATTTGTGCGGTAGAAGCAGTTGGCATCGGTGCAAGCAACAATGAGT 495117 Query 62461 TTCTAAGACCGTATGTT--CTGATTTTATCTTTTA--GAGGTTCCCAATTCCAAAGATCC 62516 | | | ||| ||||| | ||||| || || | ||| ||| ||||| ||||| Sbjct 495118 TGCGTACACC--ATGTTGCTTTATTTTCTCCTTCAATTCGGT--CCAGTTCCAGAGATCA 495173 Query 62517 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 62576 | || |||||| ||||| || ||| | || ||| || Sbjct 495174 GTTGGCGTTTTATCCCACATGTCATATTGTAGTATACCCTTGCTGACTGGTGAACCTTCA 495233 Query 62577 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62636 ||||| ||||| | || | || ||||| | ||||||||| || || ||||| || || Sbjct 495234 TATGTCTCGTAAGTGCCATATTTTTCAGCCAATTCACAACTGGCTTCCAATGCGCCATAG 495293 Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696 ||||| |||||||| || | | ||| | | ||| || || || ||||| || Sbjct 495294 TAAATAGTTTCGAATATTTGTTGATTCAACAAGTATGCCTCATCACTTTCGTATGGAAAA 495353 Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62756 | | ||| || ||||| || || ||||| | |||||||| || || | ||||| | Sbjct 495354 CGCATTAAAATTAAGGCGTCGGCAAAACCTTGTATGCCAATACCAATGGGACGATGTCGC 495413 Query 62757 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62816 ||| || | | || || || | ||||||| ||| | ||||| ||||| || | | Sbjct 495414 AAATTCGATTTCTTGGCCTCCGGTAAGGGATAATGATTGACGTCTATGATTTTGTTCAAA 495473 Query 62817 TTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC- 62872 || | | |||||| | |||| | | | |||| ||| ||| | ||| Sbjct 495474 TTACGCGTAACAATTTTTGTGACTTCTTTAAGCCGTTT---AAAGTCATACGTTTTATCT 495530 Query 62873 --TATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 62930 | | ||| |||||||||| || | || || | ||| ||||| |||||||| | | Sbjct 495531 GGTGTGACATACATGTTCAATGCTATTGAGGCTAAATTGCAAACAGCTACCTCGTCGGGT 495590 Query 62931 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGT 62990 | | ||||| | || || || || | ||||||||| || || || || | ||| || Sbjct 495591 GCGGAATATTCAACAATTTCGGTACACAAATTACTACATTTAATCGTGCCAATATTCTGC 495650 Query 62991 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 63050 |||||||||||| | || || ||||| ||||| | ||| | || || || || || | | Sbjct 495651 TGATTACTCTTTCTATTGCAAGCATCTTTATACAACATGTACGGTGTGCCGGTCTCTACC 495710 Query 63051 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA---TTATAGATTTGTATCTC 63107 || ||||| ||||| || ||| | |||| ||||| || | ||| | | || Sbjct 495711 TGCGATTCAATAATGGCAAACCA-AAGACTTTGTGCTTTAACCTTCT-TATTAGCACGTC 495768 Query 63108 CTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT 63167 | |||| ||| ||| ||| ||| |||||||| || ||||| || | | || Sbjct 495769 C-TTCTTGTTCATATTTCTCATATAATTTCTCGAACTCTTCACCCCATACTTCATGTAAA 495827 Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC--CTTC-ACTCGTTTC 63224 || ||||| | || |||||||| | |||||| ||| ||||| |||| || ||| | Sbjct 495828 CCCGGACACTTATGTGGACACATTAGCGACCAGTCT---TCATCGGCTTCGACACGTCGC 495884 Query 63225 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTT 63283 ||||| ||||| || ||||| | || ||| |||| |||||| | | ||| || || || Sbjct 495885 ATAAATAGATCCGGTATCCACA-AGGCATAGAATAAATCTCTTGCGCGATGCTCTTCTTT 495943 Query 63284 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63343 || ||||| || || | ||| | ||| | | || || | |||||| ||||||| || Sbjct 495944 GCCAGTATTTTTCTTCAAATCCAAAAACTCGAAAACGTCCGCATGCCATGGTTCCAGATA 496003 Query 63344 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63403 ||||| | | || || || || || || ||||| | || | || ||||| Sbjct 496004 GATGGCAAAGGCGCCGGGACGCTTACCGCCACCTTGATCAACATAACGTGCCACATTATT 496063 Query 63404 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCT 63463 | | ||||||| |||||| | | ||| || || | ||||| ||||| | || | Sbjct 496064 AAACACTCTCAGCATTGGCACTAAACCATTGGAAGTGCCATTTGTACCCGCAATTGCAGT 496123 Query 63464 TCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63521 || | || || || | | | ||| | ||| || || ||||| ||| ||||| Sbjct 496124 GCCTTTCGCGCGTATGCAATGCACATT--CAAACCAATACCGCCTGCAGATTTGGAGATC 496181 Query 63522 AATGCGCATCGTTTTAACG-TGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAG 63580 ||||| || | | | || ||| | | ||||| || || ||| || | |||| |||| Sbjct 496182 AATGCACAGTGATGTGCCGATGTGA-AAATACCGTCAATTGAATCGTCCACCATGGTAAG 496240 Query 63581 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63640 ||||| || |||| ||| | | | || | ||| |||| || || || || Sbjct 496241 CAGAAAGCACGATGACAATTGCGGTTGCTTGGTGGCAGCAGCGAATAGCGTTGGTGAGGC 496300 Query 63641 GTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 63700 || ||||| | |||||||| | ||||| || ||||| || | || ||||| Sbjct 496301 ATGTGTAAAATAACGCTCAGAAAGCAAGTTGTATGTTTCAATTGCGGCATCAATATCTTC 496360 Query 63701 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 63760 ||| || || | || || |||||||||||||| || || | ||||| || ||| Sbjct 496361 ACCATGTATACCGATGGCAACGCGCATTAACATGTGTTGCGGACGCTCAACAATTTTGCC 496420 Query 63761 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 63820 || | || | ||| || || ||| | ||||||||||||||||| || || ||| Sbjct 496421 ATTCAACTTGAGCAAATACGAACGTTCGAGTGTTTTAAAACCAAAATAATTATAACCAAA 496480 Query 63821 GTCTCGTTCGTAAATAATAACCGAGTT 63847 ||| || || || || ||| | ||||| Sbjct 496481 GTCACGGTCATAGATTATAGCGGAGTT 496507 >seq7 Length=4380649 Score = 304 bits (336), Expect = 2e-77 Identities = 493/707 (70%), Gaps = 3/707 (0%) Strand=Plus/Plus Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 ||| | ||| || || ||||||||||| ||| || |||||||| || || | Sbjct 4094564 CAAGCGATCAGCCACAAATTCTATATAATCGGACATTGATTTGCAATTCATACCAATTAA 4094623 Query 33192 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251 || || || | ||| |||| | |||||||| ||||| || || || | || || Sbjct 4094624 ATTTACGGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTTTAACAGCTTCGGAAATGAT 4094683 Query 33252 AGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 33311 ||| ||| | ||| || || | ||||||| |||||||||||||||||| Sbjct 4094684 TTCAATAATTCGTTCATTACTTGGCTTCTGTATCAAATGTTGAAACATCAAACATGCGAA 4094743 Query 33312 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 33371 ||| || |||||||||||||||| ||||| || ||||||||||| | || ||||| Sbjct 4094744 ATCACAATGCAGACCCTCGTCTCGTGAGATTAGCTCATTGGAAAACGTTAAGCCAGGCAT 4094803 Query 33372 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTC 33431 || ||||| ||||||||||| || || || || || |||| || || || ||||| Sbjct 4094804 TAAACCACGTTTTTTAAGCCAGAAGATCGACGCAAAACTTCCACTGAAAAAAATACCTTC 4094863 Query 33432 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTCATGTA-TCCACTT 33488 || || ||||| ||||| | | || ||| | || || | | | | |||| Sbjct 4094864 CACAGCTGCAAATGCAATTACACGTTCACCAAAGTTTGCCGACTTTGAGGAAATCCAAGC 4094923 Query 33489 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33548 | |||||||| ||||| ||||| |||||||||||| || ||||| || | ||| Sbjct 4094924 AAGTGCCCAATCTGCCTTACGCTTTACGGCAGGCATCGTTTCAATAGCATTGAATAAATA 4094983 Query 33549 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33608 ||| ||| || ||| |||| ||| |||||||| || | |||||||||||| ||||| Sbjct 4094984 GTTCCTTTGTTTCGAATCCTTAATATATGTATCGATTAATATACTATACATTTCGGAATG 4095043 Query 33609 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 33668 | ||| || || || || |||||||| |||||||| | ||||| |||| || || || Sbjct 4095044 CACGTTCTCCATAGCAATTTGAAATCCATAGAAACAACGTGCCTCTGTAACTTGGACCTC 4095103 Query 33669 TGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33728 || |||||||| | ||||| ||||| || || || ||| || |||||||| || Sbjct 4095104 CTGACTGAATCGTTCAACTAAATTCTCATTAACAATACCATCAGATGCGGCAAAAAAGGC 4095163 Query 33729 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33788 ||||| ||| || |||| ||| | || || |||||||| ||||| Sbjct 4095164 TAATACGTGTGAGATGAAATGCCGTTCATTGTCAGTGAGACGTGCCCAATCATCCATATC 4095223 Query 33789 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 |||||| | ||| ||||| || ||||||||||| || || ||||||| Sbjct 4095224 TTTAGAAAGATCCACTTCCTCAACTGTCCAAAACGACGCTTCTGCCT 4095270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622903811727520