Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_007055.1 Length=43681 Score E Sequences producing significant alignments: (Bits) Value seq884 545 6e-151 seq641 86.0 2e-12 >seq884 Length=19560 Score = 545 bits (604), Expect = 6e-151 Identities = 932/1339 (70%), Gaps = 31/1339 (2%) Strand=Plus/Plus Query 352 AGAACGAAAGCAGCAGAGTTATTAGGTAAACGTTACCGACTATTCACTGATAAACAAGAA 411 || || |||||||| || ||| | ||||||||| | || |||||||| |||||| || Sbjct 7227 AGGACTAAAGCAGCGGAATTACTTGGTAAACGTCATGCGCTGTTCACTGACAAACAACAA 7286 Query 412 GTAGAACACACTGGATCGGTTCAATTTGTGGATGACATC-----TAATGCGAGTGAAGTT 466 ||||| |||| | | |||||| ||||| ||| | ||| || ||| Sbjct 7287 ATAGAAGTTACTGAAATGCCAGTATTTGTTGATGATATCGGTGATGATGATGGTTAAGAA 7346 Query 467 AAGT------GAGTTAATACCTGAACACTTTCATTCCTTATGGCATGCAGCAAAAGATAA 520 || || ||| |||| || | |||||||| ||||| || | || Sbjct 7347 AAAACTATCAGAATTATTACCGAAAAAATTTCATTCGGTATGGAGAGCCACTCTTAATTC 7406 Query 521 AGGTAAGTTGAATATCGTCGCTAAGGGCGGACGTGGTTCGGGTAAATCATCTGACATTGC 580 | | | ||||| || |||||| ||||||||||| ||||||||||| || || || Sbjct 7407 GGACATACTCAATATTGTTTGTAAGGGTGGACGTGGTTCTGGTAAATCATCAGATATCGC 7466 Query 581 TATTATTATCGTACTG--TTGATTATGCGTTATCCAGTGAACGCA-TTGATATTACGTAA 637 |||||| |||| || ||||| | ||| | || || || ||| ||| || Sbjct 7467 ACATATTAT--TACTCAATTACTTATGAGGTATGCTGTCAATGCGGTTGGCATTCGATAT 7524 Query 638 GATAGACAACACATTAGCTTTGTCAGTGTTCGAACAGATTAAATGGGCAATC-AACGTTA 696 | | || || ||||||| ||| | | || || || ||||||||||| ||| | Sbjct 7525 GTT-GATAATACATTAGAACAATCAATCTATGAGCAAATGAAATGGGCAATTGAACAGCA 7583 Query 697 TGGGTGTATCGCACTTGTTTAAGATTAAGGTATCGCCTATGGAAATCACATATGTTCCTA 756 ||| ||| |||| | ||||| |||| |||||| || ||||||||| | ||| Sbjct 7584 AGGG-GTAACGCATCTATTTAAATTTAATAAATCGCCGTTGAGAATCACATACATACCTC 7642 Query 757 GAGGTAATAAAATGGTATTCAGAGGGGCGCAGAACCCTGAACGTATTAAATCATTGAAAG 816 | |||||| | ||| | |||||||| || || || |||||| | || || || || |||| Sbjct 7643 GTGGTAATTATATGATTTTCAGAGGTGCCCAAAATCCTGAAAGAATCAAGTCTTTAAAAG 7702 Query 817 ACGCTCAATTCCCTTATGCGATAGCTTGGATAGAGGAATTAGCAGAGTTTAAAACAGAAG 876 | || ||||| | |||||| | ||||| ||||| |||| ||||||||||| |||| Sbjct 7703 ATAGTCGGTTCCCGTTTGCGATTGGCTGGATTGAGGAGTTAGGCGAGTTTAAAACTGAAG 7762 Query 877 ATGAAGTGACGACCATTACTAACTCACTATTACGTGGTGAATTGGATAATGGTCTTTTTT 936 ||||||| ||||||||||| || ||||| |||||||||||||| | ||||||||||||| Sbjct 7763 ATGAAGTAACGACCATTACCAATTCACTTTTACGTGGTGAATTAGGAAATGGTCTTTTTT 7822 Query 937 ATAAGtttttttACACGTATAACCCCCCTAAACGAAAACAGTCGTGGGTTAATAAAAAAT 996 |||| || |||| || || ||||| || ||||| ||| || ||||| || || |||| Sbjct 7823 ATAAATTCTTTTTCAGCTACAACCCGCCAAAACGTCGACAATCTTGGGTGAACAAGAAAT 7882 Query 997 ATGAATCTTCATTCCAACCTGATAATACGTTTGTTCATCATTCAACTTACTTGAACAATC 1056 |||||||| ||||||||||||||||| ||||||||||| || ||||| | |||| Sbjct 7883 ATGAATCTAGTTTCCAACCTGATAATACATTTGTTCATCACTCTACTTATAAAGATAATC 7942 Query 1057 CTTTCATAGCCAAAGAGTTTATTGAAGAAGCAAAGGCAGCTAAGGCAATAAATGAGTTGC 1116 |||| || | | ||| || | |||||| ||||||| | | | |||| || | Sbjct 7943 CTTTTATTTCGAGAGAATTCTTGAAAGAAGTGGAGGCAGCAAGAGATAGAAATCCTTTTC 8002 Query 1117 GTTACCGTTGGGAGTATTTAGGCGAAGCGATTGGCAGTGGTGTTGTACCATTCAACAATT 1176 || | ||||| || || ||||| || || ||| || || ||||||| || | Sbjct 8003 GTGCTAGATGGGAATACGATGGTGAAGCAATCGGTTCTGGAGTCGTTCCATTCAGTAACT 8062 Query 1177 T--ACGTATTGAAA----CTATACCTAAAGAACAGTTTGATACATTTGATAACATTCGTA 1230 | | || |||| |||| || | ||| | ||| || |||||||| || | | Sbjct 8063 TAAAAGTGGAGAAAGGCTGTATAACTGATGAAATGGTTGCTAACTTTGATAATATCAGAA 8122 Query 1231 ATGCTGTTGACTTTGGTTATGCTACTGACCCGTTAGCATTTGTACGTTGGCACTATGACA 1290 | | | ||||||| |||||||||||||| || |||||||| ||||| |||||||| || | Sbjct 8123 ACGGTCTTGACTTCGGTTATGCTACTGATCCATTAGCATTCGTACGATGGCACTACGATA 8182 Query 1291 AGAAGAAACGTATTATATACGCAGTTGATGAACATTATGGCGTACAGATAAGTAATAGAG 1350 |||| || | || || || ||||||||| ||||| || | || |||||| | | Sbjct 8183 AGAAAAAGAATGGCATCTATGCTGTTGATGAAATCTATGGAGTGAAAATCAGTAATCGTG 8242 Query 1351 AGTTCG-CTAACTGGTTAAAGAAGAAAGGTTATCAATCTGATGAGATATACGCAGATAGT 1409 |||| | | || || |||| | ||||||||||| |||||| || | ||| Sbjct 8243 AGTTTGCCCAAAAGGCGAAAGCA-AAAGGTTATCAGTCTGATCGTATTGCATCGGATTCA 8301 Query 1410 GCAGAGCCTAAGTCTATTGCAGAATTAAAGCAAGAGCATAGCATCAG--ACGTATCAAAG 1467 ||||| ||||| || || |||||||| || | || || | || || |||||| | Sbjct 8302 GCAGAACCTAAATCCATAGCAGAATTGAACAATGAACACGGAATGAGCCACGTAT--TTG 8359 Query 1468 GTGTTAAGAAAGGACCAGACAGCGTAGAGCATGGCGAACAATGGTTAAACGACCTAGACG 1527 | ||||| ||||| || ||| || || ||||||| ||||||| | || | || Sbjct 8360 GGGTTAAAAAAGGCCCCGACTCTGTGCAGTATGGCGAGGAATGGTTGGATGATTTGGATT 8419 Query 1528 CTATTGTGATTGATCCAACACGTACACCGAATATCGCAAGAGAATTTGAAAACATTGACT 1587 |||| || || ||| | | || || ||||| || | ||| |||||||||||||| | Sbjct 8420 TTATTTGTATCGACCCACTAAGAACTCCAAATATAGCCAAAGAGTTTGAAAACATTGATT 8479 Query 1588 ATCAGACGGACAAAGACGGTAACGTCAAACCTAGATTAGAAGATAAAGATAATCATACGA 1647 |||||||||| ||||| || || || || || | |||||||||||||| || || | Sbjct 8480 ATCAGACGGATAAAGATGGCAATCCTAAGCCAAGGCTTGAAGATAAAGATAACCACACAA 8539 Query 1648 TTGATGCTACAAGATACGC 1666 | ||||| ||||||||||| Sbjct 8540 TCGATGCAACAAGATACGC 8558 Score = 86.0 bits (94), Expect = 2e-12 Identities = 161/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 35168 TTTACTCTAGCGGTTAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAAGCGGACTTT 35227 |||||||| || || || |||| ||||| || | || ||||| |||||||| ||| Sbjct 883 TTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTT 942 Query 35228 ATTAACTGTGTTGTTTTTAGAAAACAAGCAGAAAACGTAAGCAATTA--CTTGTTTAAAG 35285 || |||||||| ||| | || | || |||| | ||||| || || |||| Sbjct 943 ATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGT--AAAG 1000 Query 35286 GAAGTCTTGCAGGCGTTGATGGTCGCTTACAATCACGCAGTTACGAAAACCAAGAAGGAC 35345 ||| | ||| |||| ||| | | ||| | || | ||| || |||||| |||| | Sbjct 1001 GAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACAAGGCC 1060 Query 35346 GCCGTATCTTTGTTACTGAAGTTGTATGTGACAGTGTGCAATTCCTAGAACCTAA 35400 ||| ||| ||| ||||||||||| || || ||| | ||||| |||| || || Sbjct 1061 AACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGCCAAA 1115 >seq641 Length=27874 Score = 86.0 bits (94), Expect = 2e-12 Identities = 161/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 35168 TTTACTCTAGCGGTTAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAAGCGGACTTT 35227 |||||||| || || || |||| ||||| || | || ||||| |||||||| ||| Sbjct 26992 TTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTT 26933 Query 35228 ATTAACTGTGTTGTTTTTAGAAAACAAGCAGAAAACGTAAGCAATTA--CTTGTTTAAAG 35285 || |||||||| ||| | || | || |||| | ||||| || || |||| Sbjct 26932 ATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGT--AAAG 26875 Query 35286 GAAGTCTTGCAGGCGTTGATGGTCGCTTACAATCACGCAGTTACGAAAACCAAGAAGGAC 35345 ||| | ||| |||| ||| | | ||| | || | ||| || |||||| |||| | Sbjct 26874 GAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACAAGGCC 26815 Query 35346 GCCGTATCTTTGTTACTGAAGTTGTATGTGACAGTGTGCAATTCCTAGAACCTAA 35400 ||| ||| ||| ||||||||||| || || ||| | ||||| |||| || || Sbjct 26814 AACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGCCAAA 26760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139648359205752