Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_007056.1 Length=45286 Score E Sequences producing significant alignments: (Bits) Value seq884 502 7e-138 >seq884 Length=19560 Score = 502 bits (556), Expect = 7e-138 Identities = 805/1147 (70%), Gaps = 18/1147 (2%) Strand=Plus/Plus Query 472 ACATACTAAATGTGGTTGGTAAAGGTGGACGCGGTAGTGGTAAGTCGTCTGACATATCAA 531 ||||||| ||| | ||| |||| |||||||| ||| |||||| || || || || || Sbjct 7409 ACATACTCAATATTGTTTGTAAGGGTGGACGTGGTTCTGGTAAATCATCAGATATCGCAC 7468 Query 532 TCATCATCACACAATTAATTATGCGTTATCCAATGAATGCAGTAGTTGTACGTAAGACAG 591 || || || |||||| ||||| | ||| | | ||||| || | | || | | Sbjct 7469 ATATTATTACTCAATTACTTATGAGGTATGCTGTCAATGCGGTTGGCATTCGATATGTTG 7528 Query 592 ATAACACTTTAGCAACGTCTGTATTCGAGCAAATTAAATGGGCAATAGAACAACAAAAGG 651 |||| || |||| | || | | |||||||| ||||||||||| ||||| ||| || Sbjct 7529 ATAATACATTAGAACAATCAATCTATGAGCAAATGAAATGGGCAATTGAACAGCAAGGGG 7588 Query 652 TATCACACTTATTTAAAGTTAAAGTGTCGCCAATGGAAATCACATATATGCCAAGAGGGA 711 || | || |||||||| |||| ||||| || ||||||||| || || | || | Sbjct 7589 TAACGCATCTATTTAAATTTAATAAATCGCCGTTGAGAATCACATACATACCTCGTGGTA 7648 Query 712 ACCGAATTATCTTCAGAGGGGCGCAGAACCCTGAACGCTTAAAGTCGTTAAAAGATAGTC 771 | || || |||||||| || || || |||||| | | ||||| ||||||||||||| Sbjct 7649 ATTATATGATTTTCAGAGGTGCCCAAAATCCTGAAAGAATCAAGTCTTTAAAAGATAGTC 7708 Query 772 GATTCCCTTTTTCTATTATGTGGATTGAGGAGTTAGCCGAGTTTAAAACCGAAGATGAAG 831 | ||||| ||| | ||| |||||||||||||||| |||||||||||| |||||||||| Sbjct 7709 GGTTCCCGTTTGCGATTGGCTGGATTGAGGAGTTAGGCGAGTTTAAAACTGAAGATGAAG 7768 Query 832 TAACGACGATTACCAATTCAATGCTACGTGGAGAGTTAGACGAGGGATTGTTTTACAAAT 891 ||||||| |||||||||||| | ||||||| || |||| | || | ||||| |||| Sbjct 7769 TAACGACCATTACCAATTCACTTTTACGTGGTGAATTAGGAAATGGTCTTTTTTATAAAT 7828 Query 892 TCTTCTTCAGTTATAACCCACCTAAACGTAAGCAATCTTGGGTTAACAAAAAATATGAAA 951 |||| ||||| || ||||| || |||||| ||||||||||| ||||| ||||||| || Sbjct 7829 TCTTTTTCAGCTACAACCCGCCAAAACGTCGACAATCTTGGGTGAACAAGAAATATG-AA 7887 Query 952 GCTCGTTT-CAACCTGACAACACATTTGTACATCATTCGACATACTTAGATAACCCATTC 1010 || |||| |||||||| || |||||||| ||||| || || || |||||| || || Sbjct 7888 TCTAGTTTCCAACCTGATAATACATTTGTTCATCACTCTACTTATAAAGATAATCCTTTT 7947 Query 1011 ATCGCCAAACAATTTATTGATGAGGCAGAGGCTGCTAAGGAACGTAATGAGTTGCGTTAT 1070 || | | | |||| | | || | ||||| || | || | ||| || ||| | Sbjct 7948 ATTTCGAGAGAATTCTTGAAAGAAGTGGAGGCAGCAAGAGATAGAAATCCTTTTCGTGCT 8007 Query 1071 CGTTGGGAATACTTAGGCGAGGCAATAGGAAGTGGCGTTGTGCCTTTCAATAACTTACAG 1130 | ||||||||| || || ||||| || ||| || || || |||| ||||||| | Sbjct 8008 AGATGGGAATACGATGGTGAAGCAATCGGTTCTGGAGTCGTTCCATTCAGTAACTTAAAA 8067 Query 1131 ATTGAGAA------GATACCTGATGAGTTATTTAGGTCGTTTGATAATATTCGTAACGCT 1184 | ||||| ||| ||||||| | || ||||||||||| | |||| | Sbjct 8068 GTGGAGAAAGGCTGTATAACTGATGAAATGGTTGCTAACTTTGATAATATCAGAAACGGT 8127 Query 1185 GTCGATTTTGGGTACGCGACGGATCCTTTAGCTTTTGTGCGTTGGCACTACGATAAGAAA 1244 | || || || || || || ||||| ||||| || || || |||||||||||||||||| Sbjct 8128 CTTGACTTCGGTTATGCTACTGATCCATTAGCATTCGTACGATGGCACTACGATAAGAAA 8187 Query 1245 AAACGCGTTATATACGCTGTAGACGAGTATTATGGCGTGCAAATTAGTAATAGACAGTTT 1304 || | || || ||||| || || ||||| ||| |||| |||||| | ||||| Sbjct 8188 AAGAATGGCATCTATGCTGTTGATGAAATCTATGGAGTGAAAATCAGTAATCGTGAGTTT 8247 Query 1305 G-GTAAGTGGTTATGGTCGAAAGGCTATCAGAGCGATGATATATACGCAGATAGCGCTGA 1363 | || || | | | ||||| |||||| ||| ||| | ||| || || Sbjct 8248 GCCCAAAAGGCGAAAG-CAAAAGGTTATCAGTCTGATCGTATTGCATCGGATTCAGCAGA 8306 Query 1364 ACCCAAGTCAATTGACGAGTTACGAAAAGAACACGGTATTA--AACGCATTAAAGGTGTT 1421 ||| || || || | || || || |||||||| || | ||| ||| || ||| Sbjct 8307 ACCTAAATCCATAGCAGAATTGAACAATGAACACGGAATGAGCCACGTATT--TGGGGTT 8364 Query 1422 AAAAAAGGTCCTGATTCAGTTGAATACGGGGAGCAATGGTTGAACGATTTAGATGCTATT 1481 |||||||| || || || || | || || ||| |||||||| | ||||| ||| |||| Sbjct 8365 AAAAAAGGCCCCGACTCTGTGCAGTATGGCGAGGAATGGTTGGATGATTTGGATTTTATT 8424 Query 1482 GTGATTGACC--CTAACCGTACTCCCAATATTGCGCGTGAATTCGAGAATATCGACTTTG 1539 || |||| |||| | ||||| ||||| || || || || || || || | | Sbjct 8425 TGTATCGACCCACTAA--GAACTCCAAATATAGCCAAAGAGTTTGAAAACATTGATTATC 8482 Query 1540 AAACAGATAAAGACGGAAATGTTAAACCTAAATTAGAAGATAAAGATAACCATACTATCG 1599 | || |||||||| || ||| ||| || | | ||||||||||||||||| || |||| Sbjct 8483 AGACGGATAAAGATGGCAATCCTAAGCCAAGGCTTGAAGATAAAGATAACCACACAATCG 8542 Query 1600 ACGCCAC 1606 | || || Sbjct 8543 ATGCAAC 8549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144784019369472