Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_007058.1 Length=43155 Score E Sequences producing significant alignments: (Bits) Value seq884 455 9e-124 >seq884 Length=19560 Score = 455 bits (504), Expect = 9e-124 Identities = 785/1139 (69%), Gaps = 18/1139 (2%) Strand=Plus/Plus Query 600 AAGGGTGGACGTGGTTCAGGTAAGTCGTCAGACATATCAATCATCATTACACAACTTATT 659 ||||||||||||||||| ||||| || ||||| || || || ||||| ||| | || Sbjct 7429 AAGGGTGGACGTGGTTCTGGTAAATCATCAGATATCGCACATATTATTACTCAATTACTT 7488 Query 660 ATGCGTTATCCAATGAACGCAGTTGTTATACGTAAGACAGATAACACATTAGCTACATCA 719 ||| | ||| | | || || |||| || || | ||||| ||||||| |||| Sbjct 7489 ATGAGGTATGCTGTCAATGCGGTTGGCATTCGATATGTTGATAATACATTAGAACAATCA 7548 Query 720 GTGTTTGAACAAATCAAATGGGCAATTGAAGAACAAAAGGTGACGCATTTATTTAAAGTT 779 | | ||| ||||| ||||||||||||||| | ||| ||| |||||| |||||||| || Sbjct 7549 ATCTATGAGCAAATGAAATGGGCAATTGAACAGCAAGGGGTAACGCATCTATTTAAATTT 7608 Query 780 AAAGTGTCGCCAATGGAAATAACTTATATACCTAGAGGGAACCGTATTATCTTTAGAGGG 839 || ||||| || ||| || || |||||| | || || ||| || || ||||| Sbjct 7609 AATAAATCGCCGTTGAGAATCACATACATACCTCGTGGTAATTATATGATTTTCAGAGGT 7668 Query 840 GCACAGAACCCTGAACGATTGAAGTCGTTAAAAGATAGTAGGTTCCCTTTTTCTATTGCG 899 || || || |||||| || | ||||| |||||||||||| ||||||| ||| | |||| Sbjct 7669 GCCCAAAATCCTGAAAGAATCAAGTCTTTAAAAGATAGTCGGTTCCCGTTTGCGATTGGC 7728 Query 900 TGGATAGAAGAGTTGGCAGAATTCAAAACAGAAGATGAAGTCACAACGATTACCAACTCA 959 ||||| || ||||| | || || ||||| ||||||||||| || || |||||||| ||| Sbjct 7729 TGGATTGAGGAGTTAGGCGAGTTTAAAACTGAAGATGAAGTAACGACCATTACCAATTCA 7788 Query 960 TTATTACGCGGAGAATTAGATGAGGGATTATTTTATAAGTTTTTCTTTAGTTACAACCCA 1019 | ||||| || ||||||| | || | |||||||| || || || || |||||||| Sbjct 7789 CTTTTACGTGGTGAATTAGGAAATGGTCTTTTTTATAAATTCTTTTTCAGCTACAACCCG 7848 Query 1020 CCTAAACGTAAGCAATCGTGGGTTAATAAAAAATATGAAAGTTCATTCCAAGCTGATAAC 1079 || |||||| ||||| ||||| || || ||||||||| | |||||| ||||||| Sbjct 7849 CCAAAACGTCGACAATCTTGGGTGAACAAGAAATATGAATCTAGTTTCCAACCTGATAAT 7908 Query 1080 ACATTCGTACATCATTCTACATACTTGAATAACCCGTTTATATCAAAACAGTTTATACAA 1139 ||||| || ||||| ||||| || |||| || ||||| || | | | || | || Sbjct 7909 ACATTTGTTCATCACTCTACTTATAAAGATAATCCTTTTATTTCGAGAGAATTCTTGAAA 7968 Query 1140 GAGGCTGAGAGTGCTAAAAAGCGTAACGAACAACGTTATCGTTGGGAATATATGGGCGAA 1199 || | ||| || | | | | || ||| | | |||||||| || ||| Sbjct 7969 GAAGTGGAGGCAGCAAGAGATAGAAATCCTTTTCGTGCTAGATGGGAATACGATGGTGAA 8028 Query 1200 GCGATAGGGAGTGGTGTTGTGCCGTTTAATAATTTAAGAATAGAAGAAATACCGCA---- 1255 || || || ||| || || || || | ||| |||| || | ||||| | | | Sbjct 8029 GCAATCGGTTCTGGAGTCGTTCCATTCAGTAACTTAA-AAGTGGAGAAAGGCTGTATAAC 8087 Query 1256 --AGGACAAT--ATGATACATTCGATAATATAAGAAATGCAGTCGATTTTGGTTACGCTA 1311 | || ||| || || || |||||||| ||||| | | || || ||||| |||| Sbjct 8088 TGATGA-AATGGTTGCTAACTTTGATAATATCAGAAACGGTCTTGACTTCGGTTATGCTA 8146 Query 1312 CTGATCCATTAGCTTTTGTACGTTGGCATTATGATAAAAAGAAACGTGTCATTTATGCTA 1371 ||||||||||||| || ||||| ||||| || ||||| || || || ||| |||||| Sbjct 8147 CTGATCCATTAGCATTCGTACGATGGCACTACGATAAGAAAAAGAATGGCATCTATGCTG 8206 Query 1372 TGGATGAGCACTACGGCGTGCAGATAAGCAACCGTGAGTTTG-CTAATTGGCTTAAAAAG 1430 | ||||| ||| || ||| | || || || |||||||||| | || ||| ||| Sbjct 8207 TTGATGAAATCTATGGAGTGAAAATCAGTAATCGTGAGTTTGCCCAAAAGGC-GAAAGCA 8265 Query 1431 AAAGGTTATCAAAGTGATGAGATATTCGCA---GATAGTGCTGAACCCAAGTCAATTGCT 1487 ||||||||||| |||| |||| ||| ||| || ||||| || || || || Sbjct 8266 AAAGGTTATCAGTCTGAT--CGTATT-GCATCGGATTCAGCAGAACCTAAATCCATAGCA 8322 Query 1488 GAATTAAAACAAGAACATGGTATTANNNNNNNNNNNNNNNNNNNNNNNGGTGCTGACAGC 1547 ||||| || | ||||| || || | || | ||| Sbjct 8323 GAATTGAACAATGAACACGGAATGAGCCACGTATTTGGGGTTAAAAAAGGCCCCGACTCT 8382 Query 1548 GTTGAATACGGGGAACAATGGCTTGATGACTTAGAGGCTATCGTAATTGACCCTAGACGC 1607 || | || || || ||||| | ||||| || || ||| || ||||| | | Sbjct 8383 GTGCAGTATGGCGAGGAATGGTTGGATGATTTGGATTTTATTTGTATCGACCCACTAAGA 8442 Query 1608 ACACCTAACATTGCTAGAGAGTTTGAAAATATCGATTATCAAACTGATAAAGATGGCAAT 1667 || || || || || | |||||||||||| || |||||||| || ||||||||||||||| Sbjct 8443 ACTCCAAATATAGCCAAAGAGTTTGAAAACATTGATTATCAGACGGATAAAGATGGCAAT 8502 Query 1668 GTTAAACCTAAGTTAGAAGATAAAGACAACCACGCAATAGACGCAACGAGATACGCATT 1726 ||| || | | | ||||||||||| |||||| |||| || ||||| |||||||| || Sbjct 8503 CCTAAGCCAAGGCTTGAAGATAAAGATAACCACACAATCGATGCAACAAGATACGCTTT 8561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137965270578888