Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_007059.1 Length=43114 Score E Sequences producing significant alignments: (Bits) Value seq884 446 5e-121 >seq884 Length=19560 Score = 446 bits (494), Expect = 5e-121 Identities = 794/1157 (69%), Gaps = 18/1157 (2%) Strand=Plus/Plus Query 508 ATACTTAACATCATTGCAAAGGGCGGACGTGGCTCAGGTAAGTCGTCAGATATATCAATC 567 ||||| || || || ||||| |||||||| || ||||| || |||||||| || Sbjct 7411 ATACTCAATATTGTTTGTAAGGGTGGACGTGGTTCTGGTAAATCATCAGATATCGCACAT 7470 Query 568 ATCATTACACAACTTATTATGCGTTATCCGATGAATGCAGTTGTTATACGTAAGACAGAT 627 || ||||| ||| | ||||| | ||| | | ||||| |||| || || | ||| Sbjct 7471 ATTATTACTCAATTACTTATGAGGTATGCTGTCAATGCGGTTGGCATTCGATATGTTGAT 7530 Query 628 AACACATTAGCTACATCAGTGTTTGAACAAATCAAGTGGGCAATTGAAGAGCAAAAGGTG 687 || ||||||| |||| | | ||| ||||| || |||||||||||| ||||| ||| Sbjct 7531 AATACATTAGAACAATCAATCTATGAGCAAATGAAATGGGCAATTGAACAGCAAGGGGTA 7590 Query 688 TCACACTTATTCAAAGTTAAAGTGTCGCCAATGGAAATCACTTATATACCTAGAGGGAAC 747 | || |||| ||| |||| ||||| || |||||| || |||||| | || || Sbjct 7591 ACGCATCTATTTAAATTTAATAAATCGCCGTTGAGAATCACATACATACCTCGTGGTAAT 7650 Query 748 CGTATTATCTTTAGAGGGGCACAGAACCCTGAACGATTGAAGTCGTTAAAAGATAGTAGG 807 ||| || || ||||| || || || |||||| || | ||||| |||||||||||| || Sbjct 7651 TATATGATTTTCAGAGGTGCCCAAAATCCTGAAAGAATCAAGTCTTTAAAAGATAGTCGG 7710 Query 808 TTCCCTTTTTCTGTTGCGTGGATAGAAGAGTTGGCAGAATTCAAAACAGAAGATGAAGTC 867 ||||| ||| | ||| ||||| || ||||| | || || ||||| ||||||||||| Sbjct 7711 TTCCCGTTTGCGATTGGCTGGATTGAGGAGTTAGGCGAGTTTAAAACTGAAGATGAAGTA 7770 Query 868 ACAACGATTACCAACTCATTATTGCGTGGAGAATTAGACGAGGGATTATTTTATAAGTTT 927 || || |||||||| ||| | || ||||| ||||||| | || | |||||||| || Sbjct 7771 ACGACCATTACCAATTCACTTTTACGTGGTGAATTAGGAAATGGTCTTTTTTATAAATTC 7830 Query 928 TTCTTTAGTTATAACCCGCCTAAACGTAAGCAATCGTGGGTTAACAAAAAATATGAAAGC 987 || || || || |||||||| |||||| ||||| ||||| ||||| ||||||||| Sbjct 7831 TTTTTCAGCTACAACCCGCCAAAACGTCGACAATCTTGGGTGAACAAGAAATATGAATCT 7890 Query 988 TCATTCCAAGCTGATAACACATTCGTACATCATTCTACATACTTGAATAACCCGTTTATA 1047 |||||| ||||||| ||||| || ||||| ||||| || |||| || ||||| Sbjct 7891 AGTTTCCAACCTGATAATACATTTGTTCATCACTCTACTTATAAAGATAATCCTTTTATT 7950 Query 1048 TCAAAACAGTTTATACAAGAGGCTGAGAGTGCTAAAAAGCGTAACGAACAACGTTATCGA 1107 || | | | || | |||| | ||| || | | | | || ||| | || Sbjct 7951 TCGAGAGAATTCTTGAAAGAAGTGGAGGCAGCAAGAGATAGAAATCCTTTTCGTGCTAGA 8010 Query 1108 TGGGAATATATGGGTGAAGCGATAGGGAGTGGTGTTGTGCCGTTTAATAATTTAAGAATA 1167 |||||||| |||||||| || || ||| || || || || | ||| |||| || Sbjct 8011 TGGGAATACGATGGTGAAGCAATCGGTTCTGGAGTCGTTCCATTCAGTAACTTAA-AAGT 8069 Query 1168 GAAGAAATACCGCA------AGGACAAT--ATGATACATTCGATAATATAAGAAATGCAG 1219 | ||||| | | | | || ||| || || || |||||||| ||||| | Sbjct 8070 GGAGAAAGGCTGTATAACTGATGA-AATGGTTGCTAACTTTGATAATATCAGAAACGGTC 8128 Query 1220 TCGATTTTGGTTACGCTACTGATCCATTAGCTTTTGTACGTTGGCATTATGATAAAAAGA 1279 | || || ||||| ||||||||||||||||| || ||||| ||||| || ||||| || | Sbjct 8129 TTGACTTCGGTTATGCTACTGATCCATTAGCATTCGTACGATGGCACTACGATAAGAAAA 8188 Query 1280 AACGTGTCATTTATGCTATGGATGAGCACTACGGCGTGCAGATAAGCAACCGTGAGTTTG 1339 | || ||| |||||| | ||||| ||| || ||| | || || || |||||||||| Sbjct 8189 AGAATGGCATCTATGCTGTTGATGAAATCTATGGAGTGAAAATCAGTAATCGTGAGTTTG 8248 Query 1340 -CTAATTGGCTTAAAAAGAAAGGTTATCAAAGTGATGAGATATTCGCA---GATAGTGCT 1395 | || ||| ||| ||||||||||| |||| |||| ||| ||| || Sbjct 8249 CCCAAAAGGC-GAAAGCAAAAGGTTATCAGTCTGAT--CGTATT-GCATCGGATTCAGCA 8304 Query 1396 GAACCCAAGTCAATTGCTGAATTAAAACAAGAACATGGTATTANNNNNNNNNNNNNNNNN 1455 ||||| || || || || ||||| || | ||||| || || | Sbjct 8305 GAACCTAAATCCATAGCAGAATTGAACAATGAACACGGAATGAGCCACGTATTTGGGGTT 8364 Query 1456 NNNNNNGGTGCTGACAGCGTTGAATACGGGGAACAATGGCTTGATGACTTAGAGGCTATC 1515 || | ||| || | || || || ||||| | ||||| || || ||| Sbjct 8365 AAAAAAGGCCCCGACTCTGTGCAGTATGGCGAGGAATGGTTGGATGATTTGGATTTTATT 8424 Query 1516 GTAATTGACCCTAGACGCACACCTAACATTGCTAGAGAGTTTGAAAATATCGATTATCAA 1575 || ||||| | | || || || || || | |||||||||||| || |||||||| Sbjct 8425 TGTATCGACCCACTAAGAACTCCAAATATAGCCAAAGAGTTTGAAAACATTGATTATCAG 8484 Query 1576 ACTGATAAAGATGGCAATGTTAAACCTAAGTTAGAAGATAAAGACAACCACGCAATAGAC 1635 || ||||||||||||||| ||| || | | | ||||||||||| |||||| |||| || Sbjct 8485 ACGGATAAAGATGGCAATCCTAAGCCAAGGCTTGAAGATAAAGATAACCACACAATCGAT 8544 Query 1636 GCAACGAGATACGCATT 1652 ||||| |||||||| || Sbjct 8545 GCAACAAGATACGCTTT 8561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137834079260064