Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_007064.1 Length=42431 Score E Sequences producing significant alignments: (Bits) Value seq884 468 1e-127 >seq884 Length=19560 Score = 468 bits (518), Expect = 1e-127 Identities = 799/1152 (69%), Gaps = 14/1152 (1%) Strand=Plus/Plus Query 691 TACTTAATGTCGTTGCAAAGGGCGGACGTGGCTCAGGTAAGTCATCAGATATATCAATCA 750 |||| ||| | ||| ||||| |||||||| || ||||| ||||||||||| || | Sbjct 7412 TACTCAATATTGTTTGTAAGGGTGGACGTGGTTCTGGTAAATCATCAGATATCGCACATA 7471 Query 751 TTATTACACAACTTATTATGCGTTATCCGATGAATGCGGTTGTTATACGTAAGACAGATA 810 ||||||| ||| | ||||| | ||| | | |||||||||| || || | |||| Sbjct 7472 TTATTACTCAATTACTTATGAGGTATGCTGTCAATGCGGTTGGCATTCGATATGTTGATA 7531 Query 811 ACACATTAGCTACATCAGTGTTTGAACAAATCAAGTGGGCAATTGAAGAGCAAAAGGTGT 870 | ||||||| |||| | | ||| ||||| || |||||||||||| ||||| ||| Sbjct 7532 ATACATTAGAACAATCAATCTATGAGCAAATGAAATGGGCAATTGAACAGCAAGGGGTAA 7591 Query 871 CACACTTATTCAAAGTTAAAGTGTCGCCAATGGAAATAACTTATATACCTAGAGGGAACC 930 | || |||| ||| |||| ||||| || ||| || || |||||| | || || Sbjct 7592 CGCATCTATTTAAATTTAATAAATCGCCGTTGAGAATCACATACATACCTCGTGGTAATT 7651 Query 931 GTATTATCTTTAGAGGGGCACAGAACCCTGAACGATTGAAGTCGTTAAAAGATAGTAGGT 990 ||| || || ||||| || || || |||||| || | ||||| |||||||||||| ||| Sbjct 7652 ATATGATTTTCAGAGGTGCCCAAAATCCTGAAAGAATCAAGTCTTTAAAAGATAGTCGGT 7711 Query 991 TCCCTTTTTCTATTGCGTGGATAGAAGAGTTGGCAGAATTCAAAACAGAAGATGAGGTCA 1050 |||| ||| | |||| ||||| || ||||| | || || ||||| |||||||| || | Sbjct 7712 TCCCGTTTGCGATTGGCTGGATTGAGGAGTTAGGCGAGTTTAAAACTGAAGATGAAGTAA 7771 Query 1051 CAACGATTACCAACTCATTATTGCGTGGAGAATTAGACGAGGGATTGTTTTATAAGTTTT 1110 | || |||||||| ||| | || ||||| ||||||| | || | |||||||| || | Sbjct 7772 CGACCATTACCAATTCACTTTTACGTGGTGAATTAGGAAATGGTCTTTTTTATAAATTCT 7831 Query 1111 TCTTTAGTTATAACCCACCTAAACGCAAGCAATCGTGGGTTAATAAAAAATATGAAAGCT 1170 | || || || ||||| || ||||| ||||| ||||| || || ||||||||| Sbjct 7832 TTTTCAGCTACAACCCGCCAAAACGTCGACAATCTTGGGTGAACAAGAAATATGAATCTA 7891 Query 1171 CATTCCAAGCTGATAACACATACGTACATCATTCTACATACTTGAATAACCCGTTTATAT 1230 |||||| ||||||| |||| || ||||| ||||| || |||| || ||||| | Sbjct 7892 GTTTCCAACCTGATAATACATTTGTTCATCACTCTACTTATAAAGATAATCCTTTTATTT 7951 Query 1231 CTAAACAGTTTATACAAGAGGCTGAGAGTGCTAAAAAGCGTAACGAACAACGTTATCGAT 1290 | | | | || | |||| | ||| || | | | | || ||| | ||| Sbjct 7952 CGAGAGAATTCTTGAAAGAAGTGGAGGCAGCAAGAGATAGAAATCCTTTTCGTGCTAGAT 8011 Query 1291 GGGAATATATGGGCGAAGCGATAGGGAGTGGTGTTGTGCCGTTTAATAATTTAAGAATAG 1350 ||||||| || ||||| || || ||| || || || || | ||| |||| || | Sbjct 8012 GGGAATACGATGGTGAAGCAATCGGTTCTGGAGTCGTTCCATTCAGTAACTTAA-AAGTG 8070 Query 1351 AAGAAA-----TACCACAAAGACAAT--ATGACACATTCGACAACATTAGAAATGCGGTC 1403 ||||| || || | ||| || | || || || || ||||| ||||| Sbjct 8071 GAGAAAGGCTGTATAACTGATGAAATGGTTGCTAACTTTGATAATATCAGAAA--CGGTC 8128 Query 1404 --GATTTTGGTTATGCTACTGATCCATTAGCTTTTGTACGTTGGCATTATGATAAAAAGA 1461 || || ||||||||||||||||||||||| || ||||| ||||| || ||||| || | Sbjct 8129 TTGACTTCGGTTATGCTACTGATCCATTAGCATTCGTACGATGGCACTACGATAAGAAAA 8188 Query 1462 AACGTGTTATATACGCAATGGACGAGTATTACGGTGTGCAGATAAGTAACCGTGAATTTG 1521 | || || || || | || || || || ||| | || ||||| ||||| |||| Sbjct 8189 AGAATGGCATCTATGCTGTTGATGAAATCTATGGAGTGAAAATCAGTAATCGTGAGTTTG 8248 Query 1522 -CTAATTGGCTTAAAAAGAAAGGTTACCAAAGCGATGAGATATTCGCTGATAGTGCTGAA 1580 | || ||| ||| |||||||| || ||| || | ||| || ||| Sbjct 8249 CCCAAAAGGC-GAAAGCAAAAGGTTATCAGTCTGATCGTATTGCATCGGATTCAGCAGAA 8307 Query 1581 CCTAAATCAATAGCTGAATTGAAACAAGAACACGGAATCAAAAAGATTAAAGGTGTTAAA 1640 |||||||| ||||| |||||||| | ||||||||||| | | | || |||||| Sbjct 8308 CCTAAATCCATAGCAGAATTGAACAATGAACACGGAATGAGCCACGTATTTGGGGTTAAA 8367 Query 1641 AAAGGTGCTGATAGCGTGGAATTCGGAGAACAATGGCTTGATGATTTAGACGCTATTGTA 1700 ||||| | || ||| | | || || ||||| | |||||||| || |||| Sbjct 8368 AAAGGCCCCGACTCTGTGCAGTATGGCGAGGAATGGTTGGATGATTTGGATTTTATTTGT 8427 Query 1701 ATTGACCCAAGACGCACACCAAACATTGCTAGAGAGTTCGAGAACATAGACTATGAGACG 1760 || |||||| | | || ||||| || || | |||||| || ||||| || ||| ||||| Sbjct 8428 ATCGACCCACTAAGAACTCCAAATATAGCCAAAGAGTTTGAAAACATTGATTATCAGACG 8487 Query 1761 GACAAAGACGGCAATGTTAAGCCTAAACTAGAAGATAAAGACAATCACACTATAGACGCA 1820 || ||||| |||||| |||||| | || ||||||||||| || ||||| || || ||| Sbjct 8488 GATAAAGATGGCAATCCTAAGCCAAGGCTTGAAGATAAAGATAACCACACAATCGATGCA 8547 Query 1821 ACAAGATACGCT 1832 |||||||||||| Sbjct 8548 ACAAGATACGCT 8559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135648623875752