Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_007065.1 Length=43440 Score E Sequences producing significant alignments: (Bits) Value seq884 443 6e-120 >seq884 Length=19560 Score = 443 bits (490), Expect = 6e-120 Identities = 830/1216 (68%), Gaps = 14/1216 (1%) Strand=Plus/Plus Query 468 AACCTATCTGACTTGCTACCTATGCACTTTCATCCGTTGTGGAAAGCAACTAAAGATAAA 527 || ||||| || || |||| | | |||||| || | |||| ||| ||| || Sbjct 7348 AAACTATCAGAATTATTACCGAAAAAATTTCATTCGGTATGGAGAGCCACTCTTAATTCG 7407 Query 528 GAAATACTCAATATCGTTGCAAAGGGTGGACGTGGTTCAGGTAAGTCATCAGACATATCT 587 || ||||||||||| ||| ||||||||||||||||| ||||| |||||||| || | Sbjct 7408 GACATACTCAATATTGTTTGTAAGGGTGGACGTGGTTCTGGTAAATCATCAGATATCGCA 7467 Query 588 ATCATCATTACACAACTTATTATGCGATATCCGATGAATGCGGTTGTTATACGTAAGACG 647 || ||||| ||| | ||||| | ||| | | |||||||||| || || | Sbjct 7468 CATATTATTACTCAATTACTTATGAGGTATGCTGTCAATGCGGTTGGCATTCGATATGTT 7527 Query 648 GATAACACACTAGCAACATCAGTGTTTGAGCAAATCAAATGGGCAATTGAAGAGCAAAAG 707 ||||| ||| ||| | |||| | | ||||||||| ||||||||||||||| ||||| | Sbjct 7528 GATAATACATTAGAACAATCAATCTATGAGCAAATGAAATGGGCAATTGAACAGCAAGGG 7587 Query 708 GTGTCACACTTGTTCAAAGTTAAAGTGTCGCCAATGGAAATAACTTATATACCTAGAGGG 767 || | || | || ||| |||| ||||| || ||| || || |||||| | || Sbjct 7588 GTAACGCATCTATTTAAATTTAATAAATCGCCGTTGAGAATCACATACATACCTCGTGGT 7647 Query 768 AACCGTATTATCTTTAGAGGGGCACAAAACCCTGAGCGATTGAAATCGTTGAAAGATAGT 827 || ||| || || ||||| || ||||| ||||| || | || || || ||||||||| Sbjct 7648 AATTATATGATTTTCAGAGGTGCCCAAAATCCTGAAAGAATCAAGTCTTTAAAAGATAGT 7707 Query 828 AGGTTTCCTTTTTCTATTTCGTGGATTGAAGAGTTGGCAGAGTTCAAAACAGAAGATGAA 887 |||| || ||| | ||| |||||||| ||||| | ||||| ||||| ||||||||| Sbjct 7708 CGGTTCCCGTTTGCGATTGGCTGGATTGAGGAGTTAGGCGAGTTTAAAACTGAAGATGAA 7767 Query 888 GTCACAACGATTACCAACTCGTTACTACGTGGAGAGTTAGACGAGGGATTATTTTATAAG 947 || || || |||||||| || | ||||||| || |||| | || | |||||||| Sbjct 7768 GTAACGACCATTACCAATTCACTTTTACGTGGTGAATTAGGAAATGGTCTTTTTTATAAA 7827 Query 948 TTTTTCTTTAGTTATAACCCGCCTAAACGTAAGCAATCGTGGGTTAATAAAAAATATGAA 1007 || || || || || |||||||| |||||| ||||| ||||| || || ||||||||| Sbjct 7828 TTCTTTTTCAGCTACAACCCGCCAAAACGTCGACAATCTTGGGTGAACAAGAAATATGAA 7887 Query 1008 AGCTCATTCCAAGCTGATAACACATACGTACATCATTCTACATACTTGAATAACCCGTTT 1067 |||||| ||||||| |||| || ||||| ||||| || |||| || ||| Sbjct 7888 TCTAGTTTCCAACCTGATAATACATTTGTTCATCACTCTACTTATAAAGATAATCCTTTT 7947 Query 1068 ATATCAAAACAGTTTATACAAGAGGCTGAGAGTGCTAAAAAGCGTAATGAACAACGTTAT 1127 || || | | | || | |||| | ||| || | | | | ||| ||| | Sbjct 7948 ATTTCGAGAGAATTCTTGAAAGAAGTGGAGGCAGCAAGAGATAGAAATCCTTTTCGTGCT 8007 Query 1128 CGATGGGAGTATATGGGCGAAGCGATAGGGAGTGGCGTTGTGCCGTTTAATAANNNNNNN 1187 ||||||| || || ||||| || || ||| || || || || | ||| Sbjct 8008 AGATGGGAATACGATGGTGAAGCAATCGGTTCTGGAGTCGTTCCATTCAGTAA-CTTAAA 8066 Query 1188 NNNNNNNNNATACCGCAAA---GA--CAAT--ATGACACATTCGATAATATAAGAAATGC 1240 | | | | | || ||| || | || |||||||| ||||| | Sbjct 8067 AGTGGAGAAAGGCTGTATAACTGATGAAATGGTTGCTAACTTTGATAATATCAGAAACGG 8126 Query 1241 AGTCGATTTTGGTTATGCTACTGATCCATTAGCTTTTGTACGTTGGCATTATGATAAAAA 1300 | || || ||||||||||||||||||||||| || ||||| ||||| || ||||| || Sbjct 8127 TCTTGACTTCGGTTATGCTACTGATCCATTAGCATTCGTACGATGGCACTACGATAAGAA 8186 Query 1301 GAAACGTGTTATATACGCAATGGACGAGCATTACGGTGTGCAGATAAGTAACCGTGAGTT 1360 || || || || || | || || || || ||| | || ||||| |||||||| Sbjct 8187 AAAGAATGGCATCTATGCTGTTGATGAAATCTATGGAGTGAAAATCAGTAATCGTGAGTT 8246 Query 1361 TG-CTAATTGGCTTAAAAAGAAAGGTTACCAAAGCGATGAGGTATT--CGCTGATAGTGC 1417 || | || ||| ||| |||||||| || ||| ||||| | ||| || Sbjct 8247 TGCCCAAAAGGC-GAAAGCAAAAGGTTATCAGTCTGAT--CGTATTGCATCGGATTCAGC 8303 Query 1418 TGAACCTAAATCAATTGCTGAATTGAAACAAGAACACGGAATCAAAAAGATTAAAGGTGT 1477 ||||||||||| || || |||||||| | ||||||||||| | | | || || Sbjct 8304 AGAACCTAAATCCATAGCAGAATTGAACAATGAACACGGAATGAGCCACGTATTTGGGGT 8363 Query 1478 TAAAAAGGGTGCTGATAGCGTGGAATTTGGGGAACAATGGCTTGATGATTTAGACGCTAT 1537 |||||| || | || ||| | | ||| || ||||| | |||||||| || ||| Sbjct 8364 TAAAAAAGGCCCCGACTCTGTGCAGTATGGCGAGGAATGGTTGGATGATTTGGATTTTAT 8423 Query 1538 TGTAATTGACCCAAGACGCACACCAAACATTGCTAGAGAGTTCGAGAACATAGACTACGA 1597 | || |||||| | | || ||||| || || | |||||| || ||||| || || | Sbjct 8424 TTGTATCGACCCACTAAGAACTCCAAATATAGCCAAAGAGTTTGAAAACATTGATTATCA 8483 Query 1598 AACGGACAAAGACGGCAATGTTAAGCCTAAATTAGAAGACAAAGACAATCACACTATAGA 1657 ||||| ||||| |||||| |||||| | | ||||| ||||| || ||||| || || Sbjct 8484 GACGGATAAAGATGGCAATCCTAAGCCAAGGCTTGAAGATAAAGATAACCACACAATCGA 8543 Query 1658 TGCAACAAGATACGCT 1673 |||||||||||||||| Sbjct 8544 TGCAACAAGATACGCT 8559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138877210234128