Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq48 105 6e-18 seq10 84.2 2e-11 >seq48 Length=1730007 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 || |||||| | || || |||||||||||||| || | |||||| | || | || | Sbjct 776668 CAGAATGCAGATTTTCGTCAAAACATTAACTGGTAAGACCATCACCTTAGAGGTCGAGCC 776727 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 | ||||||||||| | |||||| || ||| |||||||| || || || || || Sbjct 776728 ATCTGACACCATCGAAAATGTCAAAGCTAAAATTCAAGACAAAGAGGGTATCCCACCAGA 776787 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 |||||| | | || | || ||| |||||| | ||||||| | | | | | |||||| Sbjct 776788 TCAACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTCCGACTA 776847 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| ||||| || || || ||||| |||| || | ||| | || || Sbjct 776848 CAACATCCAAAAGGAGTCAACCCTCCATTTGGTGTTGCGTCTTCGTGGTGG 776898 >seq10 Length=3877145 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 |||||||||| | || || || || || ||||| || | ||||| | || | ||| | Sbjct 2844358 CAAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACC 2844417 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 | ||| || || || | || ||| |||||| ||||||||||| || || || || Sbjct 2844418 ATCCGATACTATTGAAAATGTTAAAGCTAAGATTCAGGACAAAGAAGGAATCCCCCCAGA 2844477 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||||||| | | || | | ||| |||||||| ||||| | | | | | ||| || Sbjct 2844478 TCAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGTACCTTGTCCGATTA 2844537 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || ||||| | ||| |||| || Sbjct 2844538 CAACATCCAGAAGGAGTCTACACTTCATTTGGTTCT 2844573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478629061163840