Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq71 273 6e-68 seq45 152 1e-31 seq7 107 5e-18 >seq71 Length=1348405 Score = 273 bits (302), Expect = 6e-68 Identities = 1120/1746 (64%), Gaps = 41/1746 (2%) Strand=Plus/Minus Query 363433 AATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCAT 363492 ||||| | |||||||| || ||||| || ||||||||||| ||||| || ||||| ||| Sbjct 496423 AATGGCAAAATTGTTGAGCGTCCGCAACACATGTTAATGCGCGTTGCCATCGGTATACAT 496364 Query 363493 TGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACG 363552 | ||| |||||||||| ||||||||||| || | || || ||| || || Sbjct 496363 GGTGAAGATATTGATGCCGCAATTGAAACATACAACTTGCTTTCTGAGCGTTATTTTACA 496304 Query 363553 CACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTT 363612 || ||| | ||||| | | | ||||| || | || || |||| || |||||| Sbjct 496303 CATGCCTCACCAACGCTATTCGCTGCTGCCACCAAGCAACCGCAATTGTCATCGTGCTTT 496244 Query 363613 CTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACA----CACTTAAGAATTG 363668 || || | ||| ||||||||| || || ||||| ||| ||| ||| | | || Sbjct 496243 CTGCTTACCATGGTGGACGATTCAATTGACGGTAT-TTTCACATCGGCACATCAC---TG 496188 Query 363669 TGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATG--TTCGTGCA 363726 ||| | || ||||| ||||||||| |||||| | || || || | || || Sbjct 496187 TGCATTGATCTCCAAATCTGCAGGCGGTATTGGTTTGA--ATGTGCATTGCATACGCGCG 496130 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 | || | ||| || ||| || || ||||| | || || ||||| | Sbjct 496129 AAAGGCACTGCAATTGCGGGTACAAATGGCACTTCCAATGGTTTAGTGCCAATGCTGAGA 496070 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 |||||| | ||| || | || || || || ||||| || ||||| || || ||| Sbjct 496069 GTGTTTAATAATGTGGCACGTTATGTTGATCAAGGTGGCGGTAAGCGTCCCGGCGCCTTT 496010 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || ||||| || || ||||| || |||| |||||| | || | |||||| Sbjct 496009 GCCATCTATCTGGAACCATGGCATGCGGACGTTTTCGAGTTTTTGGATTTGAAGAAAAAT 495950 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||||| || || ||| | ||| | |||||||| | ||| | | || | Sbjct 495949 ACTGGCAAAGAAGAGCATCGCGCAAGAGATTTATTCTATGCCTTGTGGATACCGGATCTA 495890 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 |||||| || || || || | | | | ||||| || | || ||||| | ||||| Sbjct 495889 TTTATGCGACGTGTCGAAGCCGATGAAGACTGGTCGCTAATGTGTCCACATAAGTGTCCG 495830 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 ||| | || ||||||||||| || | | |||| || || |||||| || Sbjct 495829 GGTTTACATGAAGTATGGGGTGAAGAGTTCGAGAAATTATATGAGAAATATGAACAAGAA 495770 Query 364087 GGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAG 364146 ||| ||| ||||| || ||||| | || ||||||||||| || || |||||| Sbjct 495769 GGACGTGCTAATAAGAAGGTTAAAGCACAAAGTCTTTGGTTTGCCATTATTGAATCGCAG 495710 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 | ||||| || ||||| || |||||||| |||||| | ||||| | ||| || ||| Sbjct 495709 GTAGAGACCGGCACACCGTACATGTTGTATAAAGATGCTTGCAATAGAAAGAGTAATCAG 495650 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 ||| | |||| || ||| | || || | |||||||| ||| ||||||| |||| Sbjct 495649 CAGAATATTGGCACGATTAAATGTAGTAATTTGTGTACCGAAATTGTTGAATATTCCGCA 495590 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT---AAAA 364323 ||||||||| || || || || | || || || || | || ||| | | Sbjct 495589 CCCGACGAGGTAGCTGTTTGCAATTTAGCCTCAATAGCATTGAACATGTATGTCACACCA 495530 Query 364324 GATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTC 364383 ||| || | |||| | | ||| | || || || | || ||| | ||| | Sbjct 495529 GATAAAACGTATGACTTTAAACGGCTTAAAGAAGTCACAAAAATTGTTACGCGTAATTTG 495470 Query 364384 GACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGT 364443 |||| | || ||| ||| ||||||| | || || ||| || || ||| |||| Sbjct 495469 AACAAAATCATAGACGTCAATCATTATCCCTTACCGGAGGCCAAGAAATCGAATTTGCGA 495410 Query 364444 CATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACG------TTTTTATG-ATGCT 364496 ||||| || |||||| |||| |||| || | || |||| |||| ||| | | Sbjct 495409 CATCGTCCCATTGGTATTGGCATACAAGGTTTTGCCGACGCCTTAATTTTAATGCGTTTT 495350 Query 364497 CAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAAT 364556 | | | | | |||| | | | || || | ||| | | || || ||||| || Sbjct 495349 CCATA-CGAAAGTGATGAGGC--ATACTTGT----TGAATCAACAAATATTCGAAACTAT 495297 Query 364557 GTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTAC 364616 || | || |||| || || ||||| ||||| ||| | || | ||| || Sbjct 495296 TTACTATGGCGCATTGGAAGCCAGTTGTGAATTGGCTGAAAAATATGGCACTTACGAGAC 495237 Query 364617 TTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCC 364676 ||||| || || || | |||| | | | || | ||| | ||| || ||||| Sbjct 495236 ATATGAAGGTTCACCAGTCAGCAAGGGTATACTACAATATGACATGTGGGATAAAACGCC 495177 Query 364677 ATCTGTCCGATGGAACTGG---GATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCG 364733 | ||| | ||||||||| || | | | || | ||| | |||||| || Sbjct 495176 AACTGATCTCTGGAACTGGACCGAATTG--AAG-GAGAAAATAAAGCAACATGGTGTACG 495120 Query 364734 CAACTCCCTCGTTAC-AGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACA 364792 ||||| | | ||| | || || ||||| || |||||||| ||||| || | || || | Sbjct 495119 CAACT-CATTGTTGCTTGCACCGATGCCAACTGCTTCTACCGCACAAATTATGGGCAATA 495061 Query 364793 ACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAAT 364852 | |||| || ||||||| || ||| ||||| |||| || || ||||| || |||| Sbjct 495060 ATGAGTCGTTTGAACCGTACACTTCGAATATTTATACACGTCGTGTGCTTTCGGGTGAAT 495001 Query 364853 TTCCGGTAGTTAATAAGTACCTAGTCAAG-GATCTTTCCGACCGCGGGCTGTGGGGTGAC 364911 | | || || ||| | | || || | | ||||| |||| || |||||| ||| Sbjct 495000 TCCAAGTTGTCAATCA-TCACTTGTTACGCGATCTCACCGAGTTGGGTTTGTGGGATGAT 494942 Query 364912 AGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCA 364971 ||||| || || || | | ||||||| | || |||||| | | || Sbjct 494941 GATATGAAAAATACCATTATAACACATCGTGGTTCTATACAAAACATTGAAACCATACCG 494882 Query 364972 GAAGATCTGAAGC-CTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGA 365030 || || | | || | | ||||| || || ||||| ||||| || ||| ||| | Sbjct 494881 AAACATAT-ACGCGATCTGTACAAGACTGTTTGGGAGATTTCAGTGAAAACCTCCATCAA 494823 Query 365031 TATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGAC 365090 ||||| || ||||| || || || ||| ||| ||||| ||||| || || | || | Sbjct 494822 AATGGCTGCAGATCGTGGCGCATTCATCGATCAAAGCCAATCGTTCAATATACACGTGGC 494763 Query 365091 TCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAA 365150 |||| | || | |||||| || || || || || || || |||||| | || || || Sbjct 494762 CGAGCCCAACTATGGCAAGCTCACCTCTATACACTTTTATGGTTGGAAAGCAGGACTCAA 494703 Query 365151 GACAGG 365156 || || Sbjct 494702 AACGGG 494697 >seq45 Length=1794600 Score = 152 bits (168), Expect = 1e-31 Identities = 454/693 (66%), Gaps = 8/693 (1%) Strand=Plus/Plus Query 111234 GGTGAATATCGAAGTGACAGAACGGGCACTGGTACC--GTAAGTTTATTTGGAGAAACAA 111291 |||| | ||||| || ||||| ||| |||||| || | ||| |||| | || Sbjct 1449211 GGTGTAAATCGACCGGATAGAACTGGCGTTGGTACTCGGTCAATTT--TTGGTGCCCAAA 1449268 Query 111292 TGCGTTTTAATCTGTCAACTCATTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGG 111351 |||| ||| |||| || | ||||||| | | || ||||||||| || ||| | Sbjct 1449269 TGCGATTTGATCTCCGAAATAGTTTTCCATTATTAACTACAAAGCGAGTATTCTGGCGAG 1449328 Query 111352 GAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAG 111411 | | |||||| | ||||||||| ||| || ||| | || || |||| || Sbjct 1449329 CGGTCGCTGAAGAATTGCTGTGGTTTGTTCATGGTCAAACAGACGCTAAAATACTTCAAG 1449388 Query 111412 CAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTC 111471 ||||||| | | || |||||||||||| | ||| || ||| | || | ||| Sbjct 1449389 AAAAAAATATCCACATATGGGATGGAAATAGTAAACGAGAGTTTTTGGACAAATGTGGGT 1449448 Query 111472 TTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTG 111531 || | | ||||||||||||||| || ||||||||||| ||||||||||| || |||| Sbjct 1449449 TTTCCAATCGCGAAGAAGGTGATCTAGGTCCAGTTTACGGTTTTCAATGGCGTCATTTTG 1449508 Query 111532 GTGCAGACTACAAAACCATGC-ACGACTCATATGATTCACAGGGAACTGATCAATTACAG 111590 | || | |||| | ||| | ||| || | ||||| |||||| | ||| Sbjct 1449509 GGGCCAAGTACAGGA-ATTGCAAAGACAGTTACAAAGGTGAGGGAGTGGATCAACTTCAG 1449567 Query 111591 AATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGG 111650 | || ||| | ||| | ||||| |||| | ||| || ||||| ||| ||| ||| Sbjct 1449568 GAAGTGATTAACACAATCAGAAACAATCCAAATGATCGACGTATTATAATGTCTGCGTGG 1449627 Query 111651 AACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTA 111709 || || | | ||||||| || || || |||||| | | ||| || |||| Sbjct 1449628 AATCCTGTCGATATACCTCAAATGGCTCTGCCCCCTTGTCATTGTCT-TGCACAATTTTT 1449686 Query 111710 TGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGG 111769 ||| | | || | | || || ||| | || || || |||||| || || | || Sbjct 1449687 TGTTGCCAATGGAGAGTTGTCTTGTCAATTATACCAACGTAGTGCTGACATGGGATTAGG 1449746 Query 111770 TGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAA 111829 ||| || || ||||||||| ||||| | ||||| | | || ||||| |||| | Sbjct 1449747 TGTACCATTCAATATTGCATCATACGCGTTGCTTACCTATATGATTGCTCACATTACTGA 1449806 Query 111830 TCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACAT 111889 |||| ||| || || ||| | ||| | | || ||||| || ||||| | || || || Sbjct 1449807 TCTCCGACCAGGGGACTTCGTCCACACTTTAGGCGATGCACACGTTTATAACAATCATAT 1449866 Query 111890 TGATGCACTTAAAACACAGTTGAAGCGCAAACC 111922 || || || | | |||| | | ||| ||||| Sbjct 1449867 CGAGGCGCTAACAGAACAGCTAACGCGTAAACC 1449899 >seq7 Length=4380649 Score = 107 bits (118), Expect = 5e-18 Identities = 222/327 (68%), Gaps = 5/327 (2%) Strand=Plus/Minus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-C 22547 |||||| | ||||||||||| | || ||||| ||||| || |||| ||||| | | Sbjct 4094890 GAACGTGTAATTGCATTTGCAGCTGTGGAAGGTATTTTTTTCAGTGGA-AGTTTTGCGTC 4094832 Query 22548 AATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAAT 22607 ||||| ||||| |||||||||| | ||||| || |||||||||| |||||| |||| Sbjct 4094831 GATCTTCTGGCTTAAAAAACGTGGTTTAATGCCTGGCTTAACGTTTTCCAATGAGCTAAT 4094772 Query 22608 TAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCAT 22667 ||||| |||||||| ||| ||||| || ||| || | | || | ||| | || Sbjct 4094771 CTCACGAGACGAGGGTCTGCATTGTGATTTCGCATGTTTGATGTTTC---AACATTTGAT 4094715 Query 22668 TCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACG 22727 || || | ||||| | |||| || ||| | | || ||| || |||| | Sbjct 4094714 ACAGAAGCCAAGTAATGAACGAATTATTGAAATCATTTCCGAAGCTGTTAAAATTGAGCA 4094655 Query 22728 TCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAG 22787 ||| | || || || || |||| | | |||||||| ||| | |||||||| Sbjct 4094654 AGAATTCTTAACTGACGCTTTGCCCGTAAATTTAATTGGTATGAATTGCAAATCAATGTC 4094595 Query 22788 TACATATATTAAATTTGTTGCAGATCG 22814 ||||| ||||||| || ||||| Sbjct 4094594 CGATTATATAGAATTTGTGGCTGATCG 4094568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303260551957304