Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq48 109 5e-19 >seq48 Length=1730007 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 || |||||| | || || |||||||||||||| || | || ||| | || ||||| || Sbjct 776668 CAGAATGCAGATTTTCGTCAAAACATTAACTGGTAAGACCATCACCTTAGAGGTCGA-GC 776726 Query 24047 CAAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCG 24105 || | ||||||||||| | |||||| || ||| |||||||| || || || || | Sbjct 776727 CATCTGACACCATCGAAAATGTCAAAGCTAAAATTCAAGACAAAGAGGGTATCCCACCAG 776786 Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATT 24165 |||||||| | |||| | || ||| || ||| | ||||||| | | | | ||| | Sbjct 776787 ATCAACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTCCGACT 776846 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 | ||||| ||||| || || || | ||||| ||||| Sbjct 776847 ACAACATCCAAAAGGAGTCAACCCTCCATTTGGTGTT 776883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429906803583660