Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq71 444 7e-120 seq7 315 9e-81 >seq71 Length=1348405 Score = 444 bits (492), Expect = 7e-120 Identities = 1245/1887 (66%), Gaps = 44/1887 (2%) Strand=Plus/Plus Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900 ||||| | ||||||||| || | | | ||| || ||||| |||| || ||||| ||| Sbjct 494640 TTGTCAACTGTGAATTGTATAGCATTTGCTGCTGGCTTCGTGCGTAAGTAATACATGCCC 494699 Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960 ||||| || || |||| || ||||| || ||| || || ||| ||| | || Sbjct 494700 GTTTTGAGTCCTGCTTTCCAACCATAAAAGTGTATAGAGGTGAGCTTGCCATAGTTGGGC 494759 Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020 || || | || ||||| | ||||| |||||||||||||| || || | ||||||||| Sbjct 494760 TCGGCCACGTGTATATTGAACGATTGGCTTTGATCGATGAATGCGCCACGATCTGCAGCC 494819 Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATAT- 62078 ||||| || || || || ||| ||||||| ||| || || | |||| | |||| Sbjct 494820 ATTTTGATGGAGGTTTTCACTGAAATCTCCCAAACAGTCTTGTACAGATCGCGT-ATATG 494878 Query 62079 CTTCTGGAAGGTTT--GTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 62136 ||| | | ||||| | || || || || |||| || || ||||| |||| || || Sbjct 494879 TTTCGGTATGGTTTCAATGTTTTGTATAGAACCACGATGTGTTATAATGGTATTTTTCAT 494938 Query 62137 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTC-TAAGGAGATGCGGATTAACTACTT 62195 ||||||| ||| || |||||| | | | | ||| || || |||| || |||| Sbjct 494939 ATCATCATCCCACAAACCCAACTCGGTGAGATCGCGTAACAAG-TGATGATTGACAACTT 494997 Query 62196 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 62255 | ||||| || || | || | || || |||||||| || |||||||| | |||| Sbjct 494998 GGAATTCACCCGAAAGCACACGACGTGTATAAATATTCGAAGTGTACGGTTCAAACGACT 495057 Query 62256 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62315 ||||||| |||| |||||| || || || ||||| ||||| ||||| | ||| || | Sbjct 495058 CATTATTGCCCATAATTTGTGCGGTAGAAGCAGTTGGCATCGGTGCAAGCAACAATGAGT 495117 Query 62316 TTCTAAGACCGTATGTT--CTGATTTTATCTTTTA--GAGGTTCCCAATTCCAAAGATCC 62371 | | | ||| ||||| | ||||| || || | ||| ||| ||||| ||||| Sbjct 495118 TGCGTACACC--ATGTTGCTTTATTTTCTCCTTCAATTCGGT--CCAGTTCCAGAGATCA 495173 Query 62372 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 62431 | || |||||| ||||| || ||| | || ||| || Sbjct 495174 GTTGGCGTTTTATCCCACATGTCATATTGTAGTATACCCTTGCTGACTGGTGAACCTTCA 495233 Query 62432 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62491 ||||| ||||| | || | || ||||| | ||||||||| || || ||||| || || Sbjct 495234 TATGTCTCGTAAGTGCCATATTTTTCAGCCAATTCACAACTGGCTTCCAATGCGCCATAG 495293 Query 62492 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAA 62551 ||||| |||||||| || | | ||| | | || || || || ||||| || Sbjct 495294 TAAATAGTTTCGAATATTTGTTGATTCAACAAGTATGCCTCATCACTTTCGTATGGAAAA 495353 Query 62552 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62611 | | ||| || ||||| || || ||||| | |||||||| || || | ||||| | Sbjct 495354 CGCATTAAAATTAAGGCGTCGGCAAAACCTTGTATGCCAATACCAATGGGACGATGTCGC 495413 Query 62612 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62671 ||| || | | || || || | ||||||| ||| | ||||| ||||| || | | Sbjct 495414 AAATTCGATTTCTTGGCCTCCGGTAAGGGATAATGATTGACGTCTATGATTTTGTTCAAA 495473 Query 62672 TTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC- 62727 || | | |||||| | |||| | | | |||| ||| ||| | ||| Sbjct 495474 TTACGCGTAACAATTTTTGTGACTTCTTTAAGCCGTTT---AAAGTCATACGTTTTATCT 495530 Query 62728 --TATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 62785 | | ||| ||||||||||||| | || || | ||| ||||| |||||||| | | Sbjct 495531 GGTGTGACATACATGTTCAATGCTATTGAGGCTAAATTGCAAACAGCTACCTCGTCGGGT 495590 Query 62786 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 62845 | | ||||| | || || || || | ||||||||| || || || || | ||| || Sbjct 495591 GCGGAATATTCAACAATTTCGGTACACAAATTACTACATTTAATCGTGCCAATATTCTGC 495650 Query 62846 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 62905 |||||||||||| | || || ||||| ||||| | ||| | || || || || || | | Sbjct 495651 TGATTACTCTTTCTATTGCAAGCATCTTTATACAACATGTACGGTGTGCCGGTCTCTACC 495710 Query 62906 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA---TTATAGATTTGTATCTC 62962 || ||||| ||||| || ||| | |||| ||||| || | ||| | | || Sbjct 495711 TGCGATTCAATAATGGCAAACCA-AAGACTTTGTGCTTTAACCTTCT-TATTAGCACGTC 495768 Query 62963 TTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGT 63022 |||| ||| ||| ||| ||| |||||||| || ||||| || | | | Sbjct 495769 -CTTCTTGTTCATATTTCTCATATAATTTCTCGAACTCTTCACCCCATACTTCATGTAAA 495827 Query 63023 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC--CTTC-ACTCGTTTC 63079 || ||||| | || |||||||| | |||||| ||| ||||| |||| || ||| | Sbjct 495828 CCCGGACACTTATGTGGACACATTAGCGACCAGTCT---TCATCGGCTTCGACACGTCGC 495884 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTT 63138 ||||| ||||| || ||||| | || ||| |||| |||||| | | ||| || || || Sbjct 495885 ATAAATAGATCCGGTATCCACA-AGGCATAGAATAAATCTCTTGCGCGATGCTCTTCTTT 495943 Query 63139 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63198 || ||||| || || | ||| | ||| | | || || | |||||| ||||||| || Sbjct 495944 GCCAGTATTTTTCTTCAAATCCAAAAACTCGAAAACGTCCGCATGCCATGGTTCCAGATA 496003 Query 63199 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63258 ||||| | | || || || || || || ||||| | || | || ||||| Sbjct 496004 GATGGCAAAGGCGCCGGGACGCTTACCGCCACCTTGATCAACATAACGTGCCACATTATT 496063 Query 63259 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCT 63318 | | ||||||| |||||| | | ||||||||| || ||||| || || | || | Sbjct 496064 AAACACTCTCAGCATTGGCACTAAACCATTGGAAGTGCCATTTGTACCCGCAATTGCAGT 496123 Query 63319 TCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63376 || | || || || | | | ||| | ||| || || ||||| ||| ||||| Sbjct 496124 GCCTTTCGCGCGTATGCAATGCACATT--CAAACCAATACCGCCTGCAGATTTGGAGATC 496181 Query 63377 AATGCGCATCGTTTTAACG-TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435 ||||| || | | | || | | | | || || || || ||| |||| |||| |||| Sbjct 496182 AATGCACAGTGATGTGCCGATGTGA-AAATACCGTCAATTGAATCGTCCACCATGGTAAG 496240 Query 63436 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63495 ||||| || |||| ||| | | | || | ||| |||| || || || || Sbjct 496241 CAGAAAGCACGATGACAATTGCGGTTGCTTGGTGGCAGCAGCGAATAGCGTTGGTGAGGC 496300 Query 63496 GTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 63555 || ||||| | |||||||| | ||||| || ||||| || | || ||||| Sbjct 496301 ATGTGTAAAATAACGCTCAGAAAGCAAGTTGTATGTTTCAATTGCGGCATCAATATCTTC 496360 Query 63556 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 63615 ||| || || | || || |||||||||||||| || || | ||||| || ||| Sbjct 496361 ACCATGTATACCGATGGCAACGCGCATTAACATGTGTTGCGGACGCTCAACAATTTTGCC 496420 Query 63616 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 63675 || | || | ||| || || ||| | ||||||||||||||||| || || ||| Sbjct 496421 ATTCAACTTGAGCAAATACGAACGTTCGAGTGTTTTAAAACCAAAATAATTATAACCAAA 496480 Query 63676 GTCTCGTTCGTAAATAATAACCGAGTT 63702 ||| || || || || ||| | ||||| Sbjct 496481 GTCACGGTCATAGATTATAGCGGAGTT 496507 >seq7 Length=4380649 Score = 315 bits (348), Expect = 9e-81 Identities = 499/711 (70%), Gaps = 11/711 (2%) Strand=Plus/Plus Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 32548 ||| | ||| || |||||||||||||| ||| || |||||||| || || | Sbjct 4094564 CAAGCGATCAGCCACAAATTCTATATAATCGGACATTGATTTGCAATTCATACCAATTAA 4094623 Query 32549 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 32608 || || || | ||| |||| | |||||||| ||||| || || || | || Sbjct 4094624 ATTTACGGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTTTAACAGCTTCGGAAAT--- 4094680 Query 32609 AGATCTTACTGTTTC-TTCACTCGGTGGATACAATA---AATGTTTAAACATCAAACATG 32664 ||| | | | ||| |||| | ||| | | || |||||| |||||||||||||| Sbjct 4094681 -GATTTCAATAATTCGTTCATTACTTGGCTTCTGTATCAAATGTTGAAACATCAAACATG 4094739 Query 32665 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 32724 ||||||| || || ||||||||||||| |||| || ||||||||||| | || | Sbjct 4094740 CGAAATCACAATGCAGACCCTCGTCTCGTGAGATTAGCTCATTGGAAAACGTTAAGCCAG 4094799 Query 32725 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTC 32784 |||||| ||||| ||||||||||| || || |||||||| |||| || ||||| | Sbjct 4094800 GCATTAAACCACGTTTTTTAAGCCAGAAGATCGACGCAAAACTTCCACTGAAAAAAATAC 4094859 Query 32785 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTCATGTA-TCC 32841 |||| || || ||||| ||||| | | || ||| | || || | | | | ||| Sbjct 4094860 CTTCCACAGCTGCAAATGCAATTACACGTTCACCAAAGTTTGCCGACTTTGAGGAAATCC 4094919 Query 32842 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 32901 | | |||||||| ||||| ||||| |||||| || || |||||||| || | Sbjct 4094920 AAGCAAGTGCCCAATCTGCCTTACGCTTTACGGCAGGCATCGTTTCAATAGCATTGAATA 4094979 Query 32902 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 32961 |||||| ||| || ||| |||| ||||||||| || || | |||||||||||| | Sbjct 4094980 AATAGTTCCTTTGTTTCGAATCCTTAATATATGTATCGATTAATATACTATACATTTCGG 4095039 Query 32962 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTA 33021 |||| | ||| || || || ||||||||||| ||||| || | ||||| |||| || | Sbjct 4095040 AATGCACGTTCTCCATAGCAATTTGAAATCCATAGAAACAACGTGCCTCTGTAACTTGGA 4095099 Query 33022 CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 33081 | || || |||||||| ||||||| ||||| || || || ||| || ||||||| Sbjct 4095100 CCTCCTGACTGAATCGTTCAACTAAATTCTCATTAACAATACCATCAGATGCGGCAAAAA 4095159 Query 33082 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 33141 | || ||||| ||| || |||| ||| | || || |||||||| | Sbjct 4095160 AGGCTAATACGTGTGAGATGAAATGCCGTTCATTGTCAGTGAGACGTGCCCAATCATCCA 4095219 Query 33142 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 |||||||||| | ||||||||| || ||||||||||| || || ||||||| Sbjct 4095220 TATCTTTAGAAAGATCCACTTCCTCAACTGTCCAAAACGACGCTTCTGCCT 4095270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633587867531200