Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq558 141 8e-29 seq10 129 5e-25 >seq558 Length=79715 Score = 141 bits (156), Expect = 8e-29 Identities = 172/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 24997 CAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGT 25056 |||||||||| || ||||| || | || |||||| ||||||| | || || || | | Sbjct 66180 CAATGCAAATTTTCGTAAAAACCCTTACGGGTAAAACCATCACTCTTGAGGTTGAACCTT 66239 Query 25057 CTGACACTATCGAGTCAC--TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 | || |||||||| || | |||| |||| || || || |||||||||||||| || Sbjct 66240 CGGATACTATCGAA-CATGTTAAAGCCAAAATCCAA-GATAAGGAAGGGATTCCACCAGA 66297 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||||| | ||||||||||| |||||||| || |||| |||||| ||| || || Sbjct 66298 TCAACAGCGTTTAATTTTTGCCGGAAAACAATTGGAGGATGGTCGCACATTGGCAGACTA 66357 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| ||||| || || || || |||| ||||| || | || ||||| || Sbjct 66358 CAACATTCAGAAGGAGTCTACATTACACTTAGTCCTTCGTCTTAGAGGTGG 66408 >seq10 Length=3877145 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||||||||| |||| || | ||||| ||| | || Sbjct 2845046 ATGCAAATCTTTGTGAAGACCCTGACCGGTAAAACCATAACCTTGGAAGTTGAGCCTTCC 2845105 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| ||| | ||| |||||| || || || || |||||||| || ||| Sbjct 2845106 GATACTATTGAGAATGTTAAGGCCAAAATCCAAGATAAGGAGGGCATTCCACCAGATCAA 2845165 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || |||||||| |||||||| || || | ||||| || || |||||| Sbjct 2845166 CAACGTTTGATCTTTGCCGGTAAACAATTGGAGGACGGACGCACCCTGTCGGACTACAAT 2845225 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 || ||||| ||||| || || ||||| || Sbjct 2845226 ATCCAAAAGGAATCAACTCTTCATTTGGT 2845254 Score = 102 bits (112), Expect = 7e-17 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| ||||| || || ||||||| | || || || | || Sbjct 2844361 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCATC 2844420 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| || | || |||| || | ||| ||||||||||| || || || || Sbjct 2844421 CGATACTATTGAA--AATGTTAAAGCTAAGATTCAG-GACAAAGAAGGAATCCCCCCAGA 2844477 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | || |||||||| |||||| | ||||| | || || || |||||| Sbjct 2844478 TCAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGTACCTTGTCCGATTA 2844537 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || || || ||||| || || Sbjct 2844538 CAACATCCAGAAGGAGTCTACACTTCATTTGGTTCT 2844573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433298573237180