Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq27 93.3 5e-14 >seq27 Length=2235907 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 38456 CATGAAGCAGACGCCGCAAC-AGTTGGCCGAGGCCGGCTTCTACTATTCGGGCACCGGAG 38514 ||||||||| ||| | ||| | || ||||| |||||||||| |||| | |||||||| | Sbjct 797416 CATGAAGCA-ACGTCCCAAGGAATTAGCCGATGCCGGCTTCTTCTATACCGGCACCGGTG 797358 Query 38515 ACCAGGTCAAATGTTTCTTTTGCGGCGGCGGCCTTAAGGACTGGGAGCCTGCGGACGATC 38574 | | ||||| || || |||||| | ||||||||||| ||||| || ||||| | Sbjct 797357 ATCGCGTCAAGTGCTTTAGCTGCGGCTGTGGCCTTAAGGATTGGGATGATGATGACGAGC 797298 Query 38575 CGTGGGCGCAGCACGCGCGCTGG 38597 | |||| ||||| |||| |||| Sbjct 797297 CATGGGAACAGCATGCGCTCTGG 797275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537565755937120