Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_008364.1 Length=26537 Score E Sequences producing significant alignments: (Bits) Value seq884 131 3e-26 seq641 131 3e-26 >seq884 Length=19560 Score = 131 bits (144), Expect = 3e-26 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 4700 AGCTTTACTTTAGCCGTAAACCGTAACTATAAAAACGACCAAGGACAACGCGAAGCCGAC 4759 ||||||||| | || || |||||||||| || |||| | | || |||| ||||| || Sbjct 880 AGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGAT 939 Query 4760 TTTATTAATGTTGTAATCTGGCGAAAGCAAGCCGAATTATTGGCACAGTATGCAACTAAA 4819 ||||| || |||||| ||||| |||| || ||| | |||| | ||| | |||| Sbjct 940 TTTATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAA 999 Query 4820 GGGGCTTTAATTGGAATTACGGGACGTATTCAAACAAGAAACTATGAAAATCAACAAGGT 4879 || | ||| | ||| || || | |||||||| | || ||||| || |||||||| Sbjct 1000 GGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACAAGGC 1059 Query 4880 CAACGTATTTATGTAACCGAAGTTGTAGCCGATAACTTCCAATTATTAGA 4929 |||||| | ||||| || |||||||| ||| | |||||||||||||| Sbjct 1060 CAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGA 1109 >seq641 Length=27874 Score = 131 bits (144), Expect = 3e-26 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 4700 AGCTTTACTTTAGCCGTAAACCGTAACTATAAAAACGACCAAGGACAACGCGAAGCCGAC 4759 ||||||||| | || || |||||||||| || |||| | | || |||| ||||| || Sbjct 26995 AGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGAT 26936 Query 4760 TTTATTAATGTTGTAATCTGGCGAAAGCAAGCCGAATTATTGGCACAGTATGCAACTAAA 4819 ||||| || |||||| ||||| |||| || ||| | |||| | ||| | |||| Sbjct 26935 TTTATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAA 26876 Query 4820 GGGGCTTTAATTGGAATTACGGGACGTATTCAAACAAGAAACTATGAAAATCAACAAGGT 4879 || | ||| | ||| || || | |||||||| | || ||||| || |||||||| Sbjct 26875 GGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACAAGGC 26816 Query 4880 CAACGTATTTATGTAACCGAAGTTGTAGCCGATAACTTCCAATTATTAGA 4929 |||||| | ||||| || |||||||| ||| | |||||||||||||| Sbjct 26815 CAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGA 26766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 84794536654000