Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq7 311 1e-79 seq4 131 2e-25 >seq7 Length=4380649 Score = 311 bits (344), Expect = 1e-79 Identities = 493/707 (70%), Gaps = 0/707 (0%) Strand=Plus/Plus Query 92918 AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 || || | |||||| ||||||||||| || | ||||| | | |||||||| || | Sbjct 4094562 AACAAGCGATCAGCCACAAATTCTATATAATCGGACATTGATTTGCAATTCATACCAATT 4094621 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 | | ||| || | |||||| || ||||| |||| ||| ||| ||| ||||| | | Sbjct 4094622 AAATTTACGGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTTTAACAGCTTCGGAAATG 4094681 Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 ||||| || | || ||| ||| || |||| | || | |||| || || || Sbjct 4094682 ATTTCAATAATTCGTTCATTACTTGGCTTCTGTATCAAATGTTGAAACATCAAACATGCG 4094741 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 || || ||| | ||| ||||||||||| || | ||||||| || ||||| || || Sbjct 4094742 AAATCACAATGCAGACCCTCGTCTCGTGAGATTAGCTCATTGGAAAACGTTAAGCCAGGC 4094801 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCT 93217 | | || ||||| || ||||| || || || |||||||| ||| ||||| |||||| Sbjct 4094802 ATTAAACCACGTTTTTTAAGCCAGAAGATCGACGCAAAACTTCCACTGAAAAAAATACCT 4094861 Query 93218 TCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCAT 93277 ||||| ||||||||||| | | |||||| |||| ||||| || || | ||||| Sbjct 4094862 TCCACAGCTGCAAATGCAATTACACGTTCACCAAAGTTTGCCGACTTTGAGGAAATCCAA 4094921 Query 93278 TTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337 | |||||||| || || ||| | ||| | ||||| ||||| || |||| Sbjct 4094922 GCAAGTGCCCAATCTGCCTTACGCTTTACGGCAGGCATCGTTTCAATAGCATTGAATAAA 4094981 Query 93338 TAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAA 93397 || | | | | |||||| || |||||||||||||| | | ||||||||| ||| Sbjct 4094982 TAGTTCCTTTGTTTCGAATCCTTAATATATGTATCGATTAATATACTATACATTTCGGAA 4095041 Query 93398 TGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACT 93457 || || |||||||| |||||||| ||||| |||||||| | || || || | || || Sbjct 4095042 TGCACGTTCTCCATAGCAATTTGAAATCCATAGAAACAACGTGCCTCTGTAACTTGGACC 4095101 Query 93458 TCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaa 93517 || ||| |||| || || | ||| ||||| || |||||||| ||||| |||||||| Sbjct 4095102 TCCTGACTGAATCGTTCAACTAAATTCTCATTAACAATACCATCAGATGCGGCAAAAAAG 4095161 Query 93518 GCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGA 93577 || |||| || || ||||| |||| || | || ||||||| | | Sbjct 4095162 GCTAATACGTGTGAGATGAAATGCCGTTCATTGTCAGTGAGACGTGCCCAATCATCCATA 4095221 Query 93578 TCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 ||||| |||||||| ||||| || || ||||||||||| |||||||| Sbjct 4095222 TCTTTAGAAAGATCCACTTCCTCAACTGTCCAAAACGACGCTTCTGC 4095268 >seq4 Length=6961367 Score = 131 bits (144), Expect = 2e-25 Identities = 84/91 (92%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGG 126319 || |||||||||||||||| |||||||||||||||||||||| |||||||||| ||| Sbjct 2492478 TATAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGG 2492537 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||||||||||||||||| Sbjct 2492538 AGCGTGGGTTCGAACCCCACACCTGACAAAT 2492568 Score = 127 bits (140), Expect = 2e-24 Identities = 97/112 (87%), Gaps = 7/112 (6%) Strand=Plus/Minus Query 126243 CGAATTTTGCGC----TTCTATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGAT 126298 ||| || ||||| |||||| | |||||||||||||||| ||||||||||||||||| Sbjct 2470484 CGATTTGTGCGCGTTGTTCTATATG-AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGAT 2470426 Query 126299 TTAAGATCTGGTTCCC--TCGGGAGCGTGGGTTCGAACCCCACACCTGACAA 126348 ||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 2470425 TTAAGCTCTGGTTCCCGAGAGGGAGCGTGGGTTCGAACCCCACACCTGACAA 2470374 Score = 127 bits (140), Expect = 2e-24 Identities = 81/87 (93%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 2491523 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 2491582 Query 126324 TGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||||||||||||| Sbjct 2491583 TGGGTTCGAACCCCACACCTGACAAAT 2491609 Score = 125 bits (138), Expect = 8e-24 Identities = 83/90 (92%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 126262 TACAG-TCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGG 126318 ||||| |||||||||||||| |||||||||||||||||||||| |||||||||| || Sbjct 2472312 TACAGGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGG 2472253 Query 126319 GAGCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||||||| Sbjct 2472252 GAGCGTGGGTTCGAACCCCACACCTGACAA 2472223 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 2472125 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 2472066 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 2472065 GTGGGTTCGAACCCCACACCTGACA 2472041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556822014645280