Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq71 340 2e-88 seq10 163 2e-35 seq48 150 2e-31 seq558 143 2e-29 >seq71 Length=1348405 Score = 340 bits (376), Expect = 2e-88 Identities = 1041/1583 (66%), Gaps = 50/1583 (3%) Strand=Plus/Plus Query 128772 TTGCGACTT--GTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAG 128829 ||||||||| ||| || || |||| ||||| | ||||| ||||| ||||| || || Sbjct 494631 TTGCGACTTTTGTCAACTGTGAATTGTATAGCATTTGCTGCTGGCTTCGTGCGTAAGTAA 494690 Query 128830 TACATGCCTGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCG 128889 |||||||| ||||| | || ||||||| | | ||| || | ||| | | | Sbjct 494691 TACATGCCCGTTTTGAGTCCTGCTTTCCAACCATAAAAGTGTATAGAGGTGAGCTTGCCA 494750 Query 128890 TAGGTGGGTTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGA 128949 ||| |||| | || ||||| || ||||| |||||||| || || | ||| ||| Sbjct 494751 TAGTTGGGCTCGGCCACGTGTATATTGAACGATTGGCTTTGATCGATGAATGCGCCACGA 494810 Query 128950 TCGGCAGCCATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCT 129009 || |||||||| || | |||||||| || ||||| || || ||||| || || Sbjct 494811 TCTGCAGCCATTTTGATGGAGGTTTTCACTGAAATCTCCCAAACAGTCTTGTACAGATCG 494870 Query 129010 CTCACGTGTTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTG 129069 | | ||||| ||||| ||||||||| || | || | || ||||| | Sbjct 494871 CGTATATGTTTCGGTATGGTTTCAATGTTTTGTATAGAACCACGATGTGTTATAATGGTA 494930 Query 129070 TTTCGCATCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTT 129129 ||| ||| | || | ||||| || | | | | |||| ||||| | || Sbjct 494931 TTTTTCATATCATCATCCCACAAACCCAACTCGGTGAGATCGCGTAACAAGTGATGATTG 494990 Query 129130 ATTACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCA 129189 | ||||| || ||||||| | || || || ||||| || ||| |||| ||| Sbjct 494991 ACAACTTGGAATTCACCCGAAAGCACACGACGTGTATAAATATTCGAAGTGTACGGTTCA 495050 Query 129190 AACGATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAA 129249 ||||| ||||| ||||| | ||||| || || | || || ||||| || | |||| Sbjct 495051 AACGACTCATTATTGCCCATAATTTGTGCGGTAGAAGCAGTTGGCATCGGTGCAA-GCAA 495109 Query 129250 -AGCGAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACAT 129308 | ||||| || | ||| || || || || | | || |||| ||||||| ||| | Sbjct 495110 CAATGAGTTGCGTACACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAGTTCCAGA- 495168 Query 129309 CGAT--GTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTG 129366 ||| || || || | || ||||| ||| ||||| | ||||||| ||| |||| Sbjct 495169 -GATCAGTTGGCGTTTTATCCCACATGTCATATTGTAGTATACCCTTGCTG-----ACTG 495222 Query 129367 GAAAAG-----TAGGAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCA 129421 | || || | |||| ||| || || |||||||| ||||| ||||||| Sbjct 495223 GTGAACCTTCATATGTCTCGTAAGTGCCATATTTTTCAGCCAATTCACAACTGGCTTCCA 495282 Query 129422 ATGCGCCAAAATAAATTGTTTCGGCAAT-TTTGGTG-TTCAACACTTTGGCCTGGTCGCT 129479 |||||||| | ||||| |||||| ||| |||| || ||||||| | |||| || || Sbjct 495283 ATGCGCCATAGTAAATAGTTTCG--AATATTTGTTGATTCAACAAGTATGCCTCATCACT 495340 Query 129480 TTCGTACGGCATACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGAT 129539 |||||| || | ||||| | || | |||||| |||||||| || || | ||| || Sbjct 495341 TTCGTATGGAAAACGCATTAAAATTAAGGCGTCGGCAAAACCTTGTATGCCAATACCAAT 495400 Query 129540 GGGTCGATGTTTTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTAT 129599 ||| |||||| ||| ||||| | ||| | |||||||| | |||| |||||| Sbjct 495401 GGGACGATGTCGCAAATTCGATTTCTTGGCCTCCGGTAAGGGATAATGATTGACGTCTAT 495460 Query 129600 AATTTTGTTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTA 129659 |||||||| ||||| |||||||| || || | ||| | | || ||| | || Sbjct 495461 GATTTTGTTCAAATTACGCGTAACAATTTTTGTGACTTCTTTAAGCCGTTTAAAGTCATA 495520 Query 129660 CTCGCCTACATC-GATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGG 129718 | | ||| | ||| |||| | || | || ||||| |||||||| || | Sbjct 495521 C---GTTTTATCTGGTGT-GACATACATGTTCAATGCTATTGAGGCTAAATTGCAAACAG 495576 Query 129719 C-ACTT--TCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAA 129775 | || | ||| | | | || || |||||||||| |||||||||||| ||||| Sbjct 495577 CTACCTCGTCGGGTGCGGAA---TATTCAACAATTTCGGTACACAAATTACTACATTTAA 495633 Query 129776 TGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACG 129835 | ||||| | || || |||||||| || | |||||||||||||| |||| |||||||| Sbjct 495634 TCGTGCCAATATTCTGCTGATTACTCTTTCTATTGCAAGCATCTTTATACAACATGTACG 495693 Query 129836 GCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAAC-AAGTC-TCGAGCCTTGAT 129893 | ||||| || || || |||| ||| | ||||| | | | ||| | | | || || | Sbjct 495694 GTGTGCCGGTCTCTACCTGCGATTCAATAATGG--CAAACCAAAGACTTTGTGCTTTAAC 495751 Query 129894 CTGTCTTACAAATTTG-CCACATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGC 129952 || ||||| | | || || || ||| | |||| | || || || ||| | Sbjct 495752 CT-TCTTATTAGCACGTCCTTCTTGTTCATATTTCTCATATAATTTCTCGAACTCTTCAC 495810 Query 129953 CGTGTAC--GGTGTCGAGCAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATC 130010 | ||| ||| | | ||| | | | | |||||||| | ||| | |||| Sbjct 495811 CCCATACTTCATGTAAACC--CGGACACTTATGTGGACACATTAGCGACCAGTCTTCATC 495868 Query 130011 CGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTC--GC 130068 |||||||| ||| |||||| | ||| |||| ||||| ||| || || ||||||| || Sbjct 495869 GGCTTCGACACGTCGCATAAATAGATCCGGTATCCACAAGGCATAGAATAAATCTCTTGC 495928 Query 130069 GCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCG 130128 || | || | || || || || | |||| || | || ||| ||| ||| || Sbjct 495929 GCGATGCTCTTCTTTGCCAGTATTTTTC--TTCAAATCCAAAAACTCGAAAACGTCCGCA 495986 Query 130129 TGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACG 130185 ||||| ||||| | ||| || || | ||||| || || ||| ||||| ||||| Sbjct 495987 TGCCATGGTTCCAGATAGATGGCAAAGGCGCCGGGACGCTTACCGCCACCTTGATCAACA 496046 Query 130186 TGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTT 130245 | || | |||| || | |||| || ||||| | | || || |||| ||||| ||| Sbjct 496047 TAACGTGCCACATTATTAAACACTCTCAGCATTGGCACTAAACCATTGGAAGTGCCATTT 496106 Query 130246 GTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCG 130305 || | | |||| | |||| || || | | ||| || | | ||| || ||||| Sbjct 496107 GTACCCGCAATTGCAGTGCCTTTCGCGCGTATGCAATGCACATTCAAACCAATACCGCCT 496166 Query 130306 CCAAATTTTGATATCAACGCGCA 130328 || |||| || ||||| || || Sbjct 496167 GCAGATTTGGAGATCAATGCACA 496189 >seq10 Length=3877145 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||||| || || ||||| ||||| | || || || | || Sbjct 2844590 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 2844649 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| ||||||||||| ||||| || || ||||| |||||| Sbjct 2844650 GATACTATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAA 2844709 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || ||||||||||| |||||| ||||| | ||||| || || Sbjct 2844710 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 2844769 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || |||||||| ||||||||||| | || || || || ||| Sbjct 2844770 ATTCAGAAGGAATCCACATTACATTTAGTTCTACGCTTACGTGGTGGT 2844817 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || |||||||| || || || ||||| | ||||| || || ||| | | Sbjct 2844818 ATGCAAATCTTCGTTAAAACATTGACGGGAAAAACAATTACTCTGGAGGTTGAACCTTCT 2844877 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | ||| ||||||||||||||| ||||||||||| || |||||| Sbjct 2844878 GATACAATCGAAAACGTTAAAGCAAAAATTCAAGACAAAGAGGGTATTCCCCCAGATCAA 2844937 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || ||||| || || ||||| ||||| | ||||| |||||| Sbjct 2844938 CAACGTTTAATTTTCGCTGGCAAGCAATTGGAGGACGGACGCACATTGTCCGACTACAAC 2844997 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || || || | || || || ||||| | || || ||| Sbjct 2844998 ATCCAAAAGGAGTCAACACTTCACTTGGTATTGCGTCTCCGTGGTGGT 2845045 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | ||||||||||| | || | ||||| || | || Sbjct 2845046 ATGCAAATCTTTGTGAAGACCCTGACCGGTAAAACCATAACCTTGGAAGTTGAGCCTTCC 2845105 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||||| ||||| |||||||| |||||||| |||||| Sbjct 2845106 GATACTATTGAGAATGTTAAGGCCAAAATCCAAGATAAGGAGGGCATTCCACCAGATCAA 2845165 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || |||||||| ||||| || ||||| |||||| | || || ||||| Sbjct 2845166 CAACGTTTGATCTTTGCCGGTAAACAATTGGAGGACGGACGCACCCTGTCGGACTACAAT 2845225 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| ||||| || | ||||| || ||||| | || || ||| Sbjct 2845226 ATCCAAAAGGAATCAACTCTTCATTTGGTATTGCGTCTCCGTGGTGGT 2845273 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || |||||||| | ||| | || || ||| | || Sbjct 2845274 ATGCAAATCTTCGTGAAGACCCTTACTGGTAAAACTATTACTTTGGAGGTCGAACCATCC 2845333 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || ||||| |||||||| || ||||| |||||| Sbjct 2845334 GACACCATCGAAAACGTTAAGGCTAAGATCCAAGATAAGGAGGGAATCCCACCAGATCAA 2845393 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || |||||||| ||||| || ||||| || || | |||||||||||| Sbjct 2845394 CAACGTTTGATCTTTGCCGGTAAACAATTGGAGGACGGACGTACTTTGTCCGATTACAAC 2845453 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || ||||| ||||| ||| | ||||| || ||||| Sbjct 2845454 ATCCAAAAGGAATCAACCCTTCATTTGGTATTGCG 2845488 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| || || || || || || || || || ||||||| || || ||| | Sbjct 2844359 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 2844418 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 ||||||| | || || | ||| || ||||| ||||| || || || || || ||| Sbjct 2844419 TCCGATACTATTGAAAATGTTAAAGCTAAGATTCAGGACAAAGAAGGAATCCCCCCAGAT 2844478 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||||||| | || |||||||| ||||| | || || || ||| | ||||||||| Sbjct 2844479 CAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGTACCTTGTCCGATTAC 2844538 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || || | ||||| ||| | || | || || ||| Sbjct 2844539 AACATCCAGAAGGAGTCTACACTTCATTTGGTTCTTCGTCTACGTGGTGGT 2844589 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || ||||| ||||||||||||||||| |||||||| || | || || |||||||| Sbjct 2846971 AAGATCCAAGATAAGGAGGGTATTCCACCAGATCAACAGCGATTGATCTTCGCCGGCAAG 2847030 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| || || | ||||| ||||| || || || ||||| || | ||| Sbjct 2847031 CAGCTTGAGGATGGACGTACTTTGTCCGACTACAATATACAGAAGGAATCGACACTCCAT 2847090 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 || || | || | |||||||| Sbjct 2847091 TTGGTGCTACGTCTTCGCGGAGG 2847113 >seq48 Length=1730007 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||| ||||| ||||| || |||| | || || || | | Sbjct 776672 ATGCAGATTTTCGTCAAAACATTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCATCT 776731 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| |||||||||||||| |||||||| ||||| |||||| Sbjct 776732 GACACCATCGAAAATGTCAAAGCTAAAATTCAAGACAAAGAGGGTATCCCACCAGATCAA 776791 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || ||||| ||||| || || ||| |||||| | ||||| |||||| Sbjct 776792 CAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAAC 776851 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || || ||| | ||||| || ||||| | || || ||| Sbjct 776852 ATCCAAAAGGAGTCAACCCTCCATTTGGTGTTGCGTCTTCGTGGTGGT 776899 >seq558 Length=79715 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | || |||||||| |||||||||| || ||| | | Sbjct 66182 ATGCAAATTTTCGTAAAAACCCTTACGGGTAAAACCATCACTCTTGAGGTTGAACCTTCG 66241 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| ||||| ||||| || |||||||| |||||| Sbjct 66242 GATACTATCGAACATGTTAAAGCCAAAATCCAAGATAAGGAAGGGATTCCACCAGATCAA 66301 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || |||||||| ||||| || |||||| ||||| | | || |||||| Sbjct 66302 CAGCGTTTAATTTTTGCCGGAAAACAATTGGAGGATGGTCGCACATTGGCAGACTACAAC 66361 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| || || || || |||| ||||| Sbjct 66362 ATTCAGAAGGAGTCTACATTACACTTAGT 66390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419699496796180