Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_008617.1 Length=44061 Score E Sequences producing significant alignments: (Bits) Value seq641 206 7e-49 >seq641 Length=27874 Score = 206 bits (228), Expect = 7e-49 Identities = 565/856 (66%), Gaps = 11/856 (1%) Strand=Plus/Minus Query 21989 AAAGAAGAAAAACTTTTGCCAGAAGAAACAATTGATAGAATTTTTGAAGATTTGACGACG 22048 ||||| ||| |||| | || ||| |||| | ||| ||||||| | ||||| || | Sbjct 16196 AAAGATGAAGAACTACTTCCTGAAACAACAGTGGATGAAATTTTTAATGATTTAACAAGA 16137 Query 22049 AATCATCCGTTATTAGCTGATTTAGGTATTAAAAACGCTGGTTTGCGTTTGAAGTTCTTA 22108 | | ||| |||||| || ||||| | || || | ||||| || ||||| ||||| Sbjct 16136 GAACGTCCATTATTAAAAGAATTAGGCTTAAAGTACACAGGTTTACGCTTGAAAATCTTA 16077 Query 22109 AAATCTGAAACTTCTGGCGTAGCCGTTTGGGGTAAAATCTATGGTGAAATTAAAGGTCAA 22168 |||||||| | || | |||||||||||||| | || |||||||||||||| Sbjct 16076 AAATCTGATCCAAAAGGTGCCATTGTTTGGGGTAAAATTTTCGGCGAAATTAAAGGTCAG 16017 Query 22169 TTAGATGCTGCGTTCAGTGAAGAAACAGCAATTCAAAATAAATTGACAGCGTTTGTTGTT 22228 |||||||| | ||||| ||||| |||| |||| ||| ||||| ||||| || Sbjct 16016 TTAGATGCAACCTTCAGCGAAGACGATGCAAAACAAAGCAAAGCAACAGCATTTGTAGTA 15957 Query 22229 TTACCAAAAGATTTAAATGATTTTGGTCCTGCGTGGATTGAAAGATTTGTTCGTGTTCAA 22288 |||||||| ||| || || | |||||||| |||||| || | | ||| | |||| Sbjct 15956 TTACCAAACGATCTATTAGAATATGGTCCTGTTTGGATTAAACGTTATGTAACTACTCAA 15897 Query 22289 ATCGAAGAAGCATTTGCAGTGGCGCTT-GAAACTGCGTTCTTAAAAGGTACTGGTAAAGA 22347 || |||| |||||||| || | |||| ||| ||| ||| |||| || ||| || || Sbjct 15896 ATTAAAGAGGCATTTGCTGTTG-GCTTCGAAGATGCTTTCCTAAATGGCGATGGAAACGA 15838 Query 22348 CCAACCAATCGGCTTAAACCGTCAAGTACAAAAAGGTG-TATCGGTAAC--TGAGGGTGC 22404 | || || || |||| ||| | || ||| || | || ||| || | | | Sbjct 15837 TAAGCCTATTGGTTTAACTCGTGACTTAGCAAAGGGAGCTACTTCAAACGGTGTGACTAC 15778 Query 22405 TTATCCAGAGAAAGAAGAACAAGGTACGCTTACATTTGCTAATCCGCGCGCTACGGTTAA 22464 ||||||||||||||||| | ||| || | || ||||| || | || |||| Sbjct 15777 TTATCCAGAGAAAGAAGCAGCAGGAACTTTAACTTTTGCCGATGAAAAAACAGCGATTAA 15718 Query 22465 TGAATTGACGCAAGTGTTTAAATACCACTCAACTAACGAGAAAGGTAAATCAGTAGCGGT 22524 ||||| | || || ||||||||| || ||| || || || ||| | | || Sbjct 15717 AGAATTAAAAGAAATGCGTAAATACCATTCTGTTAAAGAAAATGGCAAACGTATTTCTGT 15658 Query 22525 TAAAGGTAATGTAACAATGGTTGTTAATCCGTCCGATGCTTTTGAGGTTCAAGCACAGTA 22584 || || ||| || |||| | || || ||||| || || || || ||| Sbjct 15657 CGCTGGGAAAGTAGTTATTGTTGCGAGCCCAGATGAAGCTTTGGATATTGAAACAGAGTT 15598 Query 22585 TACACATTTAAATGCAAATGGCGTATATGTTACTGCTTTACCATTTAATTTGAATGTTAT 22644 ||| | ||||||| || | | ||||| ||||| ||| ||| || | Sbjct 15597 TACTTCTCGTAATGCAATGGGGGACTGGGTTACGAAATTACCGTTTGGATTGCGGATTGT 15538 Query 22645 CGAGTCTACAGTCCAAGAAGCAGGTAAGGTTTTAACGTACGTTAAAGGTTTATATGATGG 22704 || ||| ||||| || | || || ||| || | |||| ||| || |||| Sbjct 15537 GGAATCTGATTTCCAAAAATCTGGAAAAGTTACCACTTTTGTTAGTGGTCGTTACGATG- 15479 Query 22705 TTATTTAGCTG--GTGGTATTAATGTTCAGA-AATTTAAAGAAACACTTGCGTTAGATGA 22761 |||| |||| | | |||| || ||| | ||| | ||||| | || ||||| || Sbjct 15478 -CATTT-GCTGCAGGAGCATTAGTGATCAAAGAATACGATCAAACATTAGCTTTAGAAGA 15421 Query 22762 TATGGATTTATACACTGCAAAACAATTTGCTTACGGCAAAGCGAAAGATAATAAAGTTGC 22821 | ||||| |||||||||||||||||| | || ||||| |||| || |||||||| Sbjct 15420 TTGTCGTTTATTCACTGCAAAACAATTTGCGTTTGGTAAAGCACAAGACAACAAAGTTGC 15361 Query 22822 TGCTGTTTGGAAATTA 22837 ||||| |||| |||| Sbjct 15360 AGCTGTATGGACATTA 15345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140864278746072