Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_008721.2 Length=36019 Score E Sequences producing significant alignments: (Bits) Value seq884 131 4e-26 seq641 131 4e-26 >seq884 Length=19560 Score = 131 bits (144), Expect = 4e-26 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19548 TTTACTCTAGCAGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTT 19607 |||||||| || || ||||| || |||| ||| |||||||| || || |||||||| ||| Sbjct 883 TTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTT 942 Query 19608 ATCAACGTAGTCATTTGGCGTCAGCAAGCCGAAAACTTGGCGAACTGGGTTAAGAAAGGT 19667 |||||| || ||||||||| ||| || |||| |||| || | | ||||| Sbjct 943 ATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGA 1002 Query 19668 GCTCTGATTGGAATTACAGGTCGCATTCAGACTCGTAGCTATGACAATCAGCAAGGGCAA 19727 | | | ||| || || | ||||| ||||||| |||||||| || ||||| ||| Sbjct 1003 ACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACAAGGCCAA 1062 Query 19728 CGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGA 19774 |||||||| || ||||| || ||| || ||||||||| | || || Sbjct 1063 CGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGA 1109 >seq641 Length=27874 Score = 131 bits (144), Expect = 4e-26 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19548 TTTACTCTAGCAGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTT 19607 |||||||| || || ||||| || |||| ||| |||||||| || || |||||||| ||| Sbjct 26992 TTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTT 26933 Query 19608 ATCAACGTAGTCATTTGGCGTCAGCAAGCCGAAAACTTGGCGAACTGGGTTAAGAAAGGT 19667 |||||| || ||||||||| ||| || |||| |||| || | | ||||| Sbjct 26932 ATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGA 26873 Query 19668 GCTCTGATTGGAATTACAGGTCGCATTCAGACTCGTAGCTATGACAATCAGCAAGGGCAA 19727 | | | ||| || || | ||||| ||||||| |||||||| || ||||| ||| Sbjct 26872 ACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACAAGGCCAA 26813 Query 19728 CGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGA 19774 |||||||| || ||||| || ||| || ||||||||| | || || Sbjct 26812 CGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGA 26766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 115131581526984