Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_008723.1 Length=44041 Score E Sequences producing significant alignments: (Bits) Value seq884 307 3e-79 >seq884 Length=19560 Score = 307 bits (340), Expect = 3e-79 Identities = 505/728 (69%), Gaps = 0/728 (0%) Strand=Plus/Plus Query 732 AAACTGTCCGAACTGTTACCTAAACACTTTCATAGCTTATGGAAAGCAACTAAGGATAGA 791 ||||| || ||| | ||||| ||| | |||||| |||||| ||| ||| || Sbjct 7348 AAACTATCAGAATTATTACCGAAAAAATTTCATTCGGTATGGAGAGCCACTCTTAATTCG 7407 Query 792 GAGAAGCTGAACATAGTAGCTAAAGGTGGACGTGGTAGTGGTAAGTCCTCTGATATATCT 851 || | || || || || ||| |||||||||||| |||||| || || ||||| | Sbjct 7408 GACATACTCAATATTGTTTGTAAGGGTGGACGTGGTTCTGGTAAATCATCAGATATCGCA 7467 Query 852 ATTATCATTACACAGTTAATCATGCGCTATCCTATGAATGCAGTTGTAGTACGTAAGGCA 911 ||| ||||| || ||| | ||| | ||| || | ||||| |||| | || | | Sbjct 7468 CATATTATTACTCAATTACTTATGAGGTATGCTGTCAATGCGGTTGGCATTCGATATGTT 7527 Query 912 GACAACACATTAGCTACATCAGTATTTGAGCAAATTAAGTGGGCGATAGAAGAACAAAAG 971 || || ||||||| |||| | | ||||||||| || ||||| || ||| | ||| | Sbjct 7528 GATAATACATTAGAACAATCAATCTATGAGCAAATGAAATGGGCAATTGAACAGCAAGGG 7587 Query 972 GTGTCGCACCTGTTCAAAGTTAAAGTGTCGCCAATGGAAATTACGTATGTTCCTAGAGGG 1031 || |||| || || ||| |||| ||||| || ||| || || | ||| | || Sbjct 7588 GTAACGCATCTATTTAAATTTAATAAATCGCCGTTGAGAATCACATACATACCTCGTGGT 7647 Query 1032 AATCGGATTATCTTTAGAGGGGCGCAGAACCCTGAACGATTAAAGTCGTTAAAAGATAGT 1091 ||| || || || ||||| || || || |||||| || | ||||| |||||||||||| Sbjct 7648 AATTATATGATTTTCAGAGGTGCCCAAAATCCTGAAAGAATCAAGTCTTTAAAAGATAGT 7707 Query 1092 CGATTCCCTTTTTCTATCATGTGGATAGAGGAGTTGGCAGAATTTAAGACAGAAGATGAG 1151 || ||||| ||| | || ||||| |||||||| | || ||||| || |||||||| Sbjct 7708 CGGTTCCCGTTTGCGATTGGCTGGATTGAGGAGTTAGGCGAGTTTAAAACTGAAGATGAA 7767 Query 1152 GTCACTACAATTACTAACTCTATGTTACGTGGTGAATTAGACGACGGATTATTTTATAAA 1211 || || || ||||| || || | |||||||||||||||| | || | ||||||||| Sbjct 7768 GTAACGACCATTACCAATTCACTTTTACGTGGTGAATTAGGAAATGGTCTTTTTTATAAA 7827 Query 1212 TTTTTCTTTAGTTATAACCCGCCTAAGAGAAAACAATCGTGGGTTAACAAAAAATACGAA 1271 || || || || || |||||||| || | |||||| ||||| ||||| ||||| ||| Sbjct 7828 TTCTTTTTCAGCTACAACCCGCCAAAACGTCGACAATCTTGGGTGAACAAGAAATATGAA 7887 Query 1272 ACCTCATTCCAACCGGACAATACATTCGTACACCATTCGACGTACTTAGATAATCCTTTT 1331 | |||||||| || |||||||| || || || || || || ||||||||||||| Sbjct 7888 TCTAGTTTCCAACCTGATAATACATTTGTTCATCACTCTACTTATAAAGATAATCCTTTT 7947 Query 1332 ATATCTAAACAATTCATACAAGAGGCAGAGAGTGCGAAAGAACGTAACGAACAACGTTAT 1391 || || | | ||||| | |||| | ||| || | ||| | || ||| | Sbjct 7948 ATTTCGAGAGAATTCTTGAAAGAAGTGGAGGCAGCAAGAGATAGAAATCCTTTTCGTGCT 8007 Query 1392 CGTTGGGAATATATGGGTGAAGCTATTGGTAGTGGTGTTGTACCGTTTAACAACTTGCAA 1451 | |||||||| |||||||| || ||| ||| || || || || | ||||| || Sbjct 8008 AGATGGGAATACGATGGTGAAGCAATCGGTTCTGGAGTCGTTCCATTCAGTAACTTAAAA 8067 Query 1452 ATAGAGAA 1459 | ||||| Sbjct 8068 GTGGAGAA 8075 Score = 181 bits (200), Expect = 3e-41 Identities = 294/418 (70%), Gaps = 4/418 (1%) Strand=Plus/Plus Query 2491 GCTACTGATCCGTTAGCTTTTGTACGTTGGCATTACGACAAGAAAAAACGTATTATCTAT 2550 ||||||||||| ||||| || ||||| ||||| ||||| |||||||| | |||||| Sbjct 8143 GCTACTGATCCATTAGCATTCGTACGATGGCACTACGATAAGAAAAAGAATGGCATCTAT 8202 Query 2551 GCAGTTGATGAACACTATGGTGTACAAATAAGCAATAGAGAGTTTG-CTAACTGGTTAAA 2609 || ||||||||| |||||| || |||| || ||| | ||||||| | || || ||| Sbjct 8203 GCTGTTGATGAAATCTATGGAGTGAAAATCAGTAATCGTGAGTTTGCCCAAAAGGCGAAA 8262 Query 2610 ACGTAGAGGTTATCAATCTGATGAGATATACGCAGATAGCGCTGAACCGAAGTCGATTGC 2669 | | ||||||||| |||||| || | ||| || ||||| || || || || Sbjct 8263 GC-AAAAGGTTATCAGTCTGATCGTATTGCATCGGATTCAGCAGAACCTAAATCCATAGC 8321 Query 2670 AGAGCTGAAACAAGAACACGGTATCAAGAGAATTA-AAGGTGTGAAAAAAGGTCCTGACA 2728 ||| |||| | |||||||| || || | || || || |||||||| || ||| Sbjct 8322 AGAATTGAACAATGAACACGGAAT-GAGCCACGTATTTGGGGTTAAAAAAGGCCCCGACT 8380 Query 2729 GTGTAGAACACGGGGAACAATGGCTTGATGATTTAACAGCTATCGTGATAGATCCTAACA 2788 ||| | | || || ||||| | |||||||| ||| || || || | Sbjct 8381 CTGTGCAGTATGGCGAGGAATGGTTGGATGATTTGGATTTTATTTGTATCGACCCACTAA 8440 Query 2789 GAACACCTAATATAGCAAGAGAATTTGAGAATATCGACTATGAAACGGACAAAGACGGTA 2848 |||| || |||||||| | ||| ||||| || || || ||| | ||||| ||||| || | Sbjct 8441 GAACTCCAAATATAGCCAAAGAGTTTGAAAACATTGATTATCAGACGGATAAAGATGGCA 8500 Query 2849 ACGTTAAACCAAGATTAGAAGATAAAGACAACCACACGATAGACGCCACTAGATACGC 2906 | ||| ||||| | ||||||||||| |||||||| || || || || |||||||| Sbjct 8501 ATCCTAAGCCAAGGCTTGAAGATAAAGATAACCACACAATCGATGCAACAAGATACGC 8558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140800282980792