Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq10 84.2 2e-11 >seq10 Length=3877145 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 |||||||||||| || | || || || || ||||| ||||| || |||| ||| | Sbjct 2844358 CAAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACC 2844417 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | || || | | || |||| || ||| || ||||| || | || | | Sbjct 2844418 ATCCGATACTATTGAAAATGTTAAAGCTAAGATTCAGGACAAAGAAGGAATCCCCCCAGA 2844477 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||||| | | |||||||| || |||||||| ||||| | || || ||||||| Sbjct 2844478 TCAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGTACCTTGTCCGATTA 2844537 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||| || |||||||| ||||| |||||| |||| | ||| |||| || || Sbjct 2844538 CAACATCCAGAAGGAGTCTACACTTCATTTGGTTCTTCGTCTACGTGGTGG 2844588 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| |||||| | || | | |||||| || | ||||| || ||||| || || || Sbjct 2846980 GATAAGGAGGGTATTCCACCAGATCAACAGCGATTGATCTTCGCCGGCAAGCAGCTTGAG 2847039 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| | ||| || |||| |||||||| ||||||||||| || || ||| |||| || Sbjct 2847040 GATGGACGTACTTTGTCCGACTACAATATACAGAAGGAATCGACACTCCATTTGGTGCTA 2847099 Query 22047 CGTTTACGAGGAGG 22060 ||| | || ||||| Sbjct 2847100 CGTCTTCGCGGAGG 2847113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358100480192488