Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq10 122 7e-23 seq48 118 9e-22 seq558 93.3 4e-14 >seq10 Length=3877145 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| |||||||| | | ||| ||||| | ||||| || || || |||||||||||| Sbjct 2844591 ATACCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG 2844532 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| ||||| ||||||||||| || |||| | ||| ||||| || || Sbjct 2844531 GACAAGGTACGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGG 2844472 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| |||||| ||| | | ||||| || |||| | ||| Sbjct 2844471 GGGATTCCTTCTTTGTCCTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 2844412 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| |||| || || || || || ||||| Sbjct 2844411 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 2844362 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | ||| || ||||| | || ||||| ||||| |||||||||||| Sbjct 2845503 ATGCCACCACGGAGACGCAATACCAAATGAAGGGTTGATTCCTTTTGGATGTTGTAATCG 2845444 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| || || | ||||||||| || |||| | ||| ||||| || || Sbjct 2845443 GACAAAGTACGTCCGTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGT 2845384 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || ||||| || | | ||| | |||||||| | |||| Sbjct 2845383 GGGATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTTTCGATGGTGTCGGATGGTTCG 2845324 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| || || || || || || || || ||||| Sbjct 2845323 ACCTCCAAAGTAATAGTTTTACCAGTAAGGGTCTTCACGAAGATTTGCAT 2845274 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||||| | | ||||||||||| || ||||| || ||||| || || ||| Sbjct 2844819 ATACCACCACGTAAGCGTAGAACTAAATGTAATGTGGATTCCTTCTGAATATTATAGTCG 2844760 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| || | ||||| |||||| | || | ||| ||||| || || Sbjct 2844759 GACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGT 2844700 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || ||| || ||| | | |||| || |||| | || Sbjct 2844699 GGGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCA 2844640 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| || |||| |||||| || ||||||||||| Sbjct 2844639 ACCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 2844590 >seq48 Length=1730007 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || ||||| | || || || ||||| |||||||| ||| Sbjct 776901 ATACCACCACGAAGACGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCG 776842 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| |||||| | |||||| || ||| |||| | ||||||||| || || Sbjct 776841 GACAAGGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGT 776782 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || |||||||| ||| || ||| | | ||| | |||||| | | ||| Sbjct 776781 GGGATACCCTCTTTGTCTTGAATTTTAGCTTTGACATTTTCGATGGTGTCAGATGGCTCG 776722 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || || | ||||| || ||||||||||| Sbjct 776721 ACCTCTAAGGTGATGGTCTTACCAGTTAATGTTTTGACGAAAATCTGCAT 776672 >seq558 Length=79715 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 ||||| |||| ||||| || || ||||||||||| || || || ||| ||| || Sbjct 66390 ACTAAGTGTAATGTAGACTCCTTCTGAATGTTGTAGTCTGCCAATGTGCGACCATCCTCC 66331 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 | |||||| || || | || | ||||||||| || || ||||| ||||| || || Sbjct 66330 AATTGTTTTCCGGCAAAAATTAAACGCTGTTGATCTGGTGGAATCCCTTCCTTATCTTGG 66271 Query 114294 ATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 || ||| | |||| | ||||| | || || | | ||| || || | || | ||||| Sbjct 66270 AT-TTTGGCTTTAACATGTTCGATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTTTT 66212 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 114385 || || || |||||||| ||||| ||||| || Sbjct 66211 ACCCGTAAGGGTTTTTACGAAAATTTGCATTGC 66179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420105869198064