Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq10 95.1 1e-14 >seq10 Length=3877145 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || |||| |||| ||||| || |||||| || |||||||| || | |||| || Sbjct 2845035 AGACGCAATACCAAGTGAAGTGTTGACTCCTTTTGGATGTTGTAGTCGGACAATGTGCGT 2844976 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||||||||||||| || || || | || || ||||| || | | |||| Sbjct 2844975 CCGTCCTCCAATTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGGGGAATACCCTCT 2844916 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||| | | | ||||||||| | | || | |||||| || ||| || | || Sbjct 2844915 TTGT-CTTGAATTTTTGCTTTAACGTTTTCGATTGTATCAGAAGGTTCAACCTCCAGAGT 2844857 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||||||||||| || | |||||| || ||||||||||| Sbjct 2844856 AATTGTTTTTCCCGTCAATGTTTTAACGAAGATTTGCAT 2844818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397035435988744