Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_009554.1 Length=34659 Score E Sequences producing significant alignments: (Bits) Value seq273 116 8e-22 >seq273 Length=32108 Score = 116 bits (128), Expect = 8e-22 Identities = 356/541 (66%), Gaps = 16/541 (3%) Strand=Plus/Minus Query 7002 CAAAAGATTGCACAAAGATTGAAAGGATAAGTAAATGACTGTTGTTTTAGATTCAAAAGA 7061 ||||| ||| | ||||||| | |||| || || | || || |||||||||||||| Sbjct 11989 CAAAAAATTCAAGAAAGATTAGGTGAATAATTA--TGGCAGTAGTATTAGATTCAAAAGA 11932 Query 7062 CCTTGCAAGAATCGACGAAGAATACAAGGCAGACTCCCAAGTATGGAGCTATTT-GACT- 7119 | |||| ||| || ||||||| ||||| |||||||||||| | ||||| ||| Sbjct 11931 TTTAGCAACAATTGATAAAGAATATCGCGCAGATTCCCAAGTATGG-GATATTTTGACGC 11873 Query 7120 --GGTGGTAATGGCGTAAC-GCAGC-GATTTCGTGGGCAC-AACGAAGTGCGGATCAACA 7174 || | || | | || ||||| ||||| || ||| |||||||| || | || | Sbjct 11872 AAGGCGCAAAAAGTATCACTGCAGCTGATTTTGTAGGCGTGAACGAAGTACGAGTGAATA 11813 Query 7175 AGCTGAGCGGTTTCGTTGATGCTACTGCCTACAAGCGT---GGGCAAGACAACGCCCGCA 7231 || || || ||| | || || || ||||| ||| ||| || || || || | Sbjct 11812 AGATGTCAGGATTCATGGAAGCAACGCAATACAAACGTAATGGGGAA---AATGCACGTA 11756 Query 7232 AAACGATTTCTGTTGGCAAGGAAACCGTTAAGCTGACTCACGAAGACTGGTTCGGCTATG 7291 | ||| | | | ||| ||||| | || | || || ||||||||||| || |||| Sbjct 11755 ACCAAATTGATATCGCCAAAGAAACAATCAAATTAACGCATGAAGACTGGTTTGGTTATG 11696 Query 7292 ACCTTGACCAATTCGACATGGACGAAAACGGCGCTTACACCGTGGAAAACGTTGTTCGTG 7351 | |||| ||||| || | |||| | || | || | | ||| |||| | Sbjct 11695 ATGTTGATCAATTAGATCAGTCTGAAAGTGCAGCGTTAACGATTAATAACATTGTGACAG 11636 Query 7352 AACACAACAAGATGATCACCATCCCACACCGTGACAAGGTAGCCGTGCAAAAGTTGTTCG 7411 ||||||| | |||| | || || |||||||| ||||| || ||| |||| | Sbjct 11635 AACACAAGCGTTTAGTCACTGTACCGCATCGTGACAAAGTAGCAGTACAAGTAATGTTTG 11576 Query 7412 ATTCAGCTGCCAAGAAGGCCACCGACTCAATCACTAAGGACAACGCATTGGACGCTTACG 7471 || |||| || || | | || || | || | ||||| || | ||||| | Sbjct 11575 ATAATGCTGAAAAAAAAGTGAATGAAACATTAACAGAAGACAATATTTTAGCGGCTTATG 11516 Query 7472 ACACTGCAGAAGCCTACATGTTTGACAACGAAGTACCAGGCGGCTTTGTGATGTTCGTTT 7531 | ||||||||| || ||| ||||||||||| || ||||| | ||| |||||||||| Sbjct 11515 ATGCTGCAGAAGAATATATGACAGACAACGAAGTTCCTGGCGGATATGTAATGTTCGTTT 11456 Query 7532 C 7532 | Sbjct 11455 C 11455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110779869487944